Gene detail

Detailed information of OS493_023654-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_023654-T1	DNA2/NAM7 HELICASE FAMILY	scaffold_105	1165583	1186231	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_023654-T1

ATGAGGAATGAAGCTTTGCTCGCCTCGGCTCTTGTGTCACCCAACCTTGTGGAAACCAATGCTGAACAGTTCATGAGGAACAAAGACTATCGCACAGCCGCGGCGCTTTATACTGCAACACTGCAGGGCCTCAGTGTTCCTGCTTGTGCTCAGTCGGTGGCCAGCATTCTGTGCAAGCGAGCTGATTGTTTACTTCGCTTGAATTATGTGCAGCATGTTTTGCGAGACTGTGACGTTTCCAAGAACATTATTGGAGGTGTAAACGAACACATGGCGTTTCTATGGTTACGAGCTTTGGAGTTACAGGGGGAGGTGCAGGAAGCTTTCACACATGCTGTCATATACAAAGTCCTTGATCCTCAGATGACAAGAGACAAAGATGCTGTGCGCAGATTAAGAGCAAAAGTAAAGTCGTTGTGTGGCCAGGGGAAACACCAAATTTACAGGACCATCGACATCCTGATGAAGCAAGGAGAGAAACTGTTTAAAGACGAGGAAACTGAATTAGCTCTGAGCATCTTTACTGAAGTAGTGAATCTCCTTCCCCAAGGAGGAGGAAATCCGAAAGTCCACGAATATCGAGCACAATGTTACTTCATTCGGGGAGATCTGACACAAGCCAATCATGATTGCAATCGAGCGCTCAACCTGTCTGATCGCAGCAGCATCACAGCTTTTGATACAAAAATAAAAATACACAGACGACTGGGAGAGCTTAAGGACCTTAAGGAGGCTTTGGAACTGTTGGATGAATGGCGTAAGATTTTACCTGAGAATATGGACCATGACCCGCTGATTGAGCTCGAGAAACAGATCAGAGAACAGATGGCCGAGGTCCAATCACTATCTGATGCATCGTTTGACCATGAAACAGACGAGGCAGGTGAAATACAAACTAAGCAGAAATCCAAGCGTCCTCAGACCCGAGCGTCCAAGCAAAGCAGCGGCGCAAAGCCAAAGACCAAGAAAGAGTTAGAGCGAGAAGAACGTCAGAGAGAAAAGGAACGGCAAGAAATAGCACAAAAATTGCTGGTAACAGAGAGACAAAGAGAAGAAAAAAACAACAACAGAATGGAAACTGAAGCTGCTTTTCAGATTGAAGAGGAGCAATATGCAACAAACGAGGAATCGTCGATATTAGATGATGACTCGGATACATACAGTGTCTGTAGCAATAGCACTTGTCCTGGCGACTTGGATTTAACGACGAGTACCATGTACCCCGCCACGATGCCAAGCTTTGGTCAGCCTTCATCTTCTCCTTCATGTGCATCAGAAAGCAAGCGTGAACCAAAGAGACCTCCACCTAAGGTACAACTGCCACCACTTGTGCCCACGTCTTTACAAACGAGCAAGCCAGTTGCTTGCGTTAAACCTTTCGGAGAGAGCGCGAAGAAATCGGCGTGGAGGTACATGGATAGACAAAGCTGTGGAATCCGTGACAGACCGCCAGTTGTTTTTGGCACTTACCGCCTCTGCAAGTACTACCGTTTTAAGCAACCATGTTTTCAAGGCGAACGATGTTCGTATGCACATAGTGAAGCAGAACTGAAAGCTTGGGAGGAAGACAGGAAAAAAGGTGCAATTCAACCAACTGCAAAAGACGAAAAAGCAAGTGGAAGCTCTTCTCTCTCACTAAACGAATGGCGTCAAGCGTTTAGGGGAACCTGCCGGGTTCCCTTACGACGGATTCCCCCAAAAGGTGTGGAAAACAGAGAGGACGTGCAAATTCGGGAAAGGATGTACTTTTGCGCACGGGTGGAGGAACTCACAGCATGGAATGAGCACTTGAAAAGAATGGAGAAGGAAGTGGGAAAGAAAAGTGAAGAGGAAAAGAAAAAGGAGCAGAATAAAGATGGTGATTCTGCAGTGAAAAGTAAAGTCAGTTCACTGATAAAGGATAGACGCCCTGTTCCTACTTACAAGTCCAATGACTTGGTGCCCAGCCTTCCAGGAGTGACTGTGACGTGTGAACCCGAGGATCCCAATATCTCGTTACAGGTTCCGCTGGACAGCGAAGGAGAAAAAACGTACAGCTGGACCCTGCGACTTTTCTATGAGTCGAGTATAACTGGTCATCTGCAAGATGTCGTACTCTTGTGGCAGCACCCCAAATGCTATACCCTCTCAAGCTTCAGATTCAAATGCACTGTGGGAGATCCGATCAATCCGATTATGGAAGTGGGGGACTCCAAAGAGCTCATCGACGAGCTTCACTACCCAGTGACGTCATGCTTACACGCATTACAAGGCAGCTGTGAAGTAGAAATCGTAGTCGCATTCTCCACTCTTGTGTTTGGAAGTTTTAGACAATTTGTGGTGTTCGATTTTGGCAAAGAGACCCATCTTGCTTTTGAGATGAGTATCGAAATTGGCAGTCAAGAATTTCTACAAGAGTTCAGTGAAGAGAGGACAAAGTTGGCTTTGCTTGGGCCTTTATGGGATGACGGATCTCGAAAGATCATTCCCTTCGGACGCGCAGCGCCTTCAGTGTTCAACGACGATTATTTGACAGTCAAGTACAAGTTACCCAGATCAGAAGATATTGTGCCTTCCCCTCTTCTCGAAGGATCTCAAGGCTTGAGCAAGGAAAATTACATAGACGTCATGCACCAGCTGTTATTCGTAGAGGAGTTCTACATTCGTAAACAAGTTGCCAGTTTTAATGTGCAAGGAGTACATTTACATGCTGCAAAGCTGGTTGTGAAGAAAGACGACTTCTTGTGCGCCCAGGAAGGATGGCTGTATGGCTCCTTTCACGTGTCACGCCCGATAACACCCGATAACGCAGATGGGCAATTACTACTGAGGAATCTGTTAAGAAGCATGGGGTCAGTCCTAATAGCCAAGACCCAGAGCCCTGATTCTGTGGTTTACGAAGCATTAGTGGACTCGGTTGAAGACAGTCGAGTCATACTAAAGCTGTCTGTACAGTGCTGCGAAGATCTGGCGTTGACGGATAACAGTGATGCCACAGTGGATGTTCAGTTTCGCATCAACAGACTTCCTCTGTGTGAGATGCACGACAATATTGATAGACTGGGACCTGAGCATATCCGGATATTGTTTCCAGCATTCAGCAGCGTTGGCTTGGAGGAGAAGGTTAACATCATTCCTTGGATTCTCGACCAAAAATTAAACGAAGACCAGAAAGAAATTATCACGAAGATAGCCGTTCCCTCGATTAATGCGCCTCCTCTTGTGGTGTTTGGTCCTTTTGGAACCGGAAAAACATTCACATTGAATCAGGCTGTTCGACGTATCGCCTTGGACTGTAACAACCGCGTGCTCATCTGCACACACTCAAACAGCGCTGCAGATATACACGTAGAACTGCTGGATGAATATCTAAAGGAGCAACATGGCATAATGGCCTGCACACCTTTAAGGATTTACACACCGTTGCGTAAACTGTCAACCGTTTCTGACCAAGTGAAGGAGTATTGCCTCATCACCGACAGAGGGAAAGCAACAGAAGCCTTCAGACTTCCAACTCGTGATGACGTGTTACGTCACCGAGTGGTAGTATCAACTTTGGGCATGTCAAGAGCTCTTTTTGACATGGAGCTTCATCGTGGATTTTTTTCGCACATTTTAATCGATGAAGCAGCACAGGCGCTGGAAACGGAAGCATTGACACCAATCACACTCGCAGGGAACAATACCAAAGTGGTTTTTACTGGGGACCACATGCAGGTACTGGGAAACGTAGGGGTGCTTTTTGTTTGA

Transcript

OS493_023654-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0035194	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_023654-T1 global RNA-seq network