| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| OS493_021983-T1 | SNF2/RAD54 HELICASE FAMILY | scaffold_87 | 1319698 | 1339532 | + |
| CDS | |||||
| OS493_021983-T1 | |||||
| Transcript |
| OS493_021983-T1 |
| Protein |
| OS493_021983-T1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00439 | Bromodomain | Bromodomain | Domain | Interproscan |
| PF14619 | SnAC | Snf2-ATP coupling, chromatin remodelling complex | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001487 | Domain | Bromodomain | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR018359 | Conserved_site | Bromodomain, conserved site | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR029295 | Domain | Snf2, ATP coupling domain | Interproscan |
| IPR036427 | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR049730 | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10799 | SNF2/RAD54 HELICASE FAMILY | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0008094 | Molecular Function | ATP-dependent activity, acting on DNA | Interproscan |
| GO:0008134 | Molecular Function | transcription factor binding | Interproscan |
| GO:0042393 | Molecular Function | histone binding | Interproscan |
| GO:0045944 | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for OS493_021983-T1 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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