Gene detail

Detailed information of OS493_021510-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_021510-T1	GLYCOGEN DEBRANCHING ENZYME	scaffold_83	282033	303387	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_021510-T1

ATGGCGGGTCAGGTTCGCGTGCTCCAGCTCGAAGCGGAACAGGATTTGGAAACCAAACTATTCAGACTGGAAAAAGGATGGACGCTCCGCTTCACACTGGGCCCTTCATTACAACCTTACAATGTGCACTTATTTTGCAACCATCCAGTATCTGGCCAGCAGCCATTTGATAGAAAAAAGTACAATGAGTTGTCTTGGACCTGCCTGCCTGGACAGCAGTGTGACGATGCTGACAGATTTGCTGACATTACAGCGCACACAGCAGGATCATTTCATTTCTATGTTACTTACAAAGATGGTGGACAGCTAGAAACAGAGGAGAAAAGAACAACATCAGGTTATTTTACAGTGGATCCAGTTCTAAGAGTAAACAGTACAAAAACTATACCATTGGATTGTGTGAGCTTACAGACTGTGCTGTCCAAGAGTCTTGGACCTCTCACTGAGTGGAGTGATCGACTTAGGGTGACAAAAGAAACTGGCTACAACATGATTCACTTTACACCGATACAGCAACTGGGGAAATCAAACTCTTCATATTCTCTGTCAGATCAGCTAAGCATCAATTCTGCATTTCATTCACCTGGGAGAAAGAATGCTACATTTGATGGAGTAAAGGAAGTCCTTGATAATATGCGCAAGGACTGGAAAATATTGTCAGTAGTGGACATAGTGCTTAACCACACGGGTAACAACTCTCCTTGGTTATGGGCTCATCCAGAGTGCGCATACAACTTAGAAAACTCGCCTCATCTCAAACCTGCATTTTTGTTGGATCGCGCTCTCTGGCACTTCTCTTGTCAAGTAGCTGAAGGGTTATGGATTGAGGATGGTCTGCCAGCAGAAGTGAACAATGAAGACCATATTCACAAACTTGGCGAAATCTTACGACATAAAGTCTTGCCAAAACTGCATCTGTGGGAGTTCTTTTGTGTGGATGTCAAAAAGACAGTAGATCAGTTCCGAACTGCCATGCTGAAGGCAAAAAGGCCAGTCAGTGGTGCATCCAAACATGATGAGCCACCGCTGAAGGTGACAACTGACATGTCTTATCAACGCTTTTCTGCAACAATAGACATGGAAAAGGCCCTAGAGAAGTTCAACACAGAACGCTCTGATGCTTTGGATGAAAAGGAGCGACTGCAGTTATGCTGTGATGCTTTTAAGGCACATCTTATTAGCCGCAATGAAGTCATCAAGAACAACGAAGTTGCTGATCATATCGAGTCTGCTATAAAAAGTTCACAAAATGGTGTTAGGTATGAGCGTCTGGATCCTAATGGACCAAAACATCCAAGAGTTACTAAAAAATCTCCTTTGGTAACAAATTACTTCATAACACCTGGTGACTGTGATACAGTCGAGGAAGAGGAGAAGCTGATGTTTTCTGACAAGGCGAGATTTTGTATGGCGCATCAAGGGTGGATATGGGGAGGAGACCCTCTGAAGGACTTTGCTGCCCCTGGATCATTAGTATATCTGCGACGTGAACTCATTGCGTGGGGTGACAGTGTAAAACTTCGATATGGCGAAAAACCTGAAGATGCTCCTTTTCTTTGGAATCACATGCTACAGTATACTAAGACTTGTGCAAGGTTGTTTGATGGCATTCGCCTAGATAATTGCCACAGCACACCACTTCATGTGGCAGAGTACTATGTGGATGCAGCGCGGCAAGTAAAACCAGAGTTGTATGTTACAGCAGAATTGTTCACTGGTTCTGAAGCTACTGACAATATTTTTGTCAATCAATTGGGAATCACATCACTTATAAGAGAAGCTCTGAATGCTCATGATCCTCACGAGGAGGGACGATTGATTTATCACTATGGAGGTGAACCTGTCGGCGCCTTCATGCACCCATCAGACGTGAAGCCTCTTGTGCCCAGCATTGCACATGCACTCTTTATGGATGTTACACATGACAACCCCAGTCCATTTCAGGTTCGATCTGTATATGATGCTATTGCCAGTGCTGGTTTAGTCTCAATGGCATGCTGTGCTACTGGCAGCTCCAGAGGATATGATGAACTGGTACCTCATCATATCCACGTGGTCAAAGAAGATCGCCGTTACCTGTCATGGCCAAATAAGAAGTCTAAGCTTAAAGGCACTGCATTTGTCAAGGAAAGTGATGGTATTGTGTCAGCCAAAAAGCCATCAATGAGTTACACAGATGGCTTGGGGAGAAGGATATACGCAGATGTCGCCGAACCACCGGTGTATGTGGATCAGATTCATCACGATGTTCACGCCATCACTAGACACTGTCCAGACAAGAGAAAAACAGTTGTTTTAGTAGCACATTCTGCCTTTCACAACCCCTCTGAGGACCTCCAACCCACCATGCACAAGCAGAAAATTAACATGAATGGTATACCTCCACTTACTATACCAGGTGAGATCAATGAAATCATTTTTGAAGCCATGTTAGTGAAGAAGCCAGACTCAAAAGATTTTAGTAAAGATGCTGAGTTCATCAATGGTCTTCAGTCACATGAGGTATTGCTTCAGAAGCATATCCCACTTCACAAGTCCAAGACATGTCGTGCAGAGCAAAAAGGGAATAACACATTTGAAGTGTCATTAAGGCAGCTTGGTGTGGACTTGTATGAGAAAAGATCTGGGAGCCAGGAGAGTTATAAGACCATTGACGAATTAGAGGCAATTATCGCCAATCTGTCGCTATCTGATCTCAACCGTGTGCTGTACAGAGCTAATCCTGAAGAACAAGATGATGGGAATGGCGGGGGAGTGTATGTTCTGCCTGACTCAGGAGCGCTAGTGTACTGTGGCTTACAAGGTGTGATATCTGTAATGGCCGATGTTCGTCAGTTCAATGATCTAGCGCATCCTCTGTGTAGAAATCTGCGAGATGGAAATTGGTTGATGGACTATGTTGTAGCAAGACTTCTTCCTTTTGTTGGTACAAGACAGCTGGGTACATGGCTTGACAAGACGTTCAATCTGATCAAGGAATGTCCGCGATATCTGGTGCCGTGCTATTTTGACGCCATTATCACTCCCCTTTATCTCAAGTTGTTGGATCGTGCTTGGAGTCAGATGTCGAGGTTTGTTGTAATGTTTTGTAAGGAATGGTTCATCGTTTCTCAAGGCTCTCTCTCTTGGCTCGCTCCAGTTCGTTGGTTTGTCACGGTTCAGCCTCTCTTCCAGCTCTGTCGCCCAAACTGCACCATGGGCCATCATCTGGAGCAGATATTAGCCAACTCTGACGTCACTTGCAGCAGGCTTGCCTCATTTCTCTACTGGCTTCATGCGCTGTTGGGGAAGAGACACCTTCATCTCTCTCAGAGGATTATTACTTGTAACTGGCCAGATACCAGGAGGCCAGGTGTGTTAGTTGTCTTGTCACTACGCCTTTCATAA

Transcript

OS493_021510-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14699	hGDE_N	N-terminal domain from the human glycogen debranching enzyme	Family	Interproscan
PF14701	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan
PF14702	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010401	Family	Glycogen debranching enzyme	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR029436	Domain	Eukaryotic glycogen debranching enzyme, N-terminal domain	Interproscan
IPR032788	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032792	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004134	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005980	Biological Process	glycogen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_021510-T1 global RNA-seq network