Gene detail

Detailed information of OS493_020599-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_020599-T1	CALPAIN-7	scaffold_76	1068432	1081065	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_020599-T1

ATGGTGGACGCAAAGGAACTTTGCGATGATGGTTACAGATTAGCCATACAAGCAGTCGATTTAGACAAGATTGGCAGTGGAAATGCCGCCGCTTTTTTCTACATCGAGGCTTCAGAAGCTCTGATAAAAGCGTTATCTTATGATCCCACACTAGATGTGAAAGATAAAGCCTCGCAGTACATCAGACGAGCGGAGGCCCTTCGAGCTCTGGAACAAGGTTTAACAACAACACCTGCTTCTTTCAAGTCTTCACAACAGAATGGTGTAGAAAGAGCTGAATTTCTTCTGAAGCAAGCACTTTATGAAGATGAAAGGAATCGACCAAATGATGCATTGCCACTCTATACCGATGCAGCAGCACTCTGCATTAAAACAAGCAGCGGTCTACCAGATGATGATGATTTGAAGAAAAAACTTCATTTCCGTGCTAAACAAGCAATAGAGAGAGCTGAAGCAATAAAGGGAATTTTAAGAACCTCAGCATCAGGCTCAACATCCATCACCAAAGCTGTCAAGGACCTCTCCCTGAGGTCCACTGGAGAGTCCACCCCTGGGGGTAGTACTGGGGACAAAAGGCCTCATCTCACAGCTAAGGAACTGGATGTCTTAAAGAAAACATCCTACATAAATGGCAAGCTATTTCCTCCATGGCTGGATATTGATCTGAAAGAAAGATTTGCTTATCCAGATTATTATAGTGATAAAGATGGACAGCTTGCACTTTCACAGAAACAAAGAGCTCGTTTTGCCAAGTGGTTAAGACCAACAGAATTGTGTGAAAACCCAGAGATGATTTATGCCATATCAAGCTTCAGTATCAAACAGACTATTGTGTCCGACTGCTCATTTCTAGCTTCACTTGCCATCAGTGCTGCATATGAGAGAAACTTTAAACAGAGTCTTATAACAAGCATAATTTATCCACAAAATCGTGCAGGGAAACCTGTTATCAACCCGTCAGGAAAATACATGATTAAATTGCGGGTTAATGGAGTCTCCAGAAAGGTGATTATCGATGATACTCTGCCGGTGGGAAGAGACGGAGAGCTGTTATGCTCCTACTCAAACAATCGCAATGAGATGTGGGTCAGTTTAATTGAAAAGGCTTATCTCAAGGTGATGGGAGGGTATGATTTTCCAGGTTCCAATTCTAGTATTGATCTTCACGCTCTCACGGGCTGGATTCCAGAGCGGACGTCCATCAAGCGAAATAATCCAGCATTCAATGAGAGTATGCATTTTGATCGGCTCTTGAATGGAGTCAGAAAAGGCGACTGTCTTATCACCGTAGCAACAGGCCCAATGAGTGAGAGTGATGCTGACCGAGCAGGGCTGGTACCTACTCATGCCTATGCCTTGTTGGATATAAGAAAAGTCTTGGGACATCGTCTGCTTCAACTCAAAAACCCCTGGAGTCATTTAAGATGGAAAGGAATGTTCTCCGAAATGGACTCAACTAACTGGACACCAGAACTTCAGAGAGCGCTCAATTACGACAGAAAGAGTGCTCTTCAAATTGACAATGGAGTTTTTTGGATTAGCTGGGAATGTGTCATGCAATTTTTCGACGTGATTTATATGAACTGGAATCCCAAACTCTTCAAATATCGCTTCGCCCTCCATTCGACTTGGACAGCCGCAGAAGGGCCAAAGAAAGATGTTTATAATATGGGAGACAACCCGCAGTACAAACTTGAGTTGTTATCTGGTGACAGCGATGCTGTTGTATGGATTCTCCTCACTCGACACATCACACAAAAGGATGATTTTGCTGAGAACAAAGAGTTCATAACAGTTCATGTGTTCAAGTCAGACGGAGGCAGAATCTTTTATCCAGATAACCCGTTGTTGGAAGGCACAAAAATCAACAGTCCATTTTACTTGGCTAAACTCAATGCCCCCAAAGGAACAAACCGGTTCACGCTTGTGGTGTCTCAGTACGAGAAAACTAATACCATTCATTATACTATCAAGGTATTTTCAACCACTGAATTCCGTTTATCCGCAGTCCCCGTCCCATACACAGTTGAAAAACAGGTGAATGGTGAATGGCGTGGTAACCTAGCTGGTGGATGTCCTAATTACTCCTCGCATTCCAGTAATCCTGTCTATCGCCTGCAGGTCAAGACTTCGTCGCCTTCAGAAACCGCTGAAGTTCTATTAAAACTACGCGGGCCCAAGCAATTTTCAGTTGGAGCCATATTTCGCTCGGTTGACCGCGCCTCCGACGGGAAGCCTGTGTACGAGGCCTACTCTGAGACTTACAGGCCTGGCTTTTACGTTCAGCAGCTGGCCAGGGTGCCTACGGGAACATATGACGTGATCCCTTCGACCTTTTATCCAGGGCAAGAAGGGCCGTTTATATTGACGATAGCAGCAAGCTGTAAGATTGCACTGGCGAGGAAGTAG

Transcript

OS493_020599-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00648	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan
PF04212	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001300	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR007330	Domain	MIT domain	Interproscan
IPR022683	Domain	Peptidase C2, calpain, domain III	Interproscan
IPR022684	Family	Peptidase C2, calpain family	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR036213	Homologous_superfamily	Calpain large subunit, domain III superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR051297	Family	PalB/RIM13 Calpain-like Protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46143	CALPAIN-7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0004198	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_020599-T1 global RNA-seq network