Gene detail

Detailed information of OS493_020020-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_020020-T1	HELICASE WITH DEATH DOMAIN-RELATED	scaffold_72	592865	604052	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_020020-T1

ATGGCATACAGAAGTTGCCTCACTCTCTTCTGCAATCACTGCAATACTGCATTAGCCACGTCTGACATCTTAATGTTAGCCACGATTCCTCCAACACAGTCACACTTGGCCATTAAAAAAGACCAGGAAGACAAAGCTTACGAGAAAATCCGCAAAATTCCCAATCCGGACCCTAAGAAAGCTTCGTTTTGTCCTTACAAAATTCTTTGCAAACAGTGCAATGATTACCCGGTGGGAACCATCAGCCTTATCGAAGGTAATACGCTCATATGTTTCAAGATCGAAAACGTGCACTTTAAACGGGGATATGAAGAAATCAAAGGAAAAAGGCTGAAGCAAATTAAAGACAAGCTCTTGCAATATGGTTTAGAAGTAGTGAATGTTTCTCAACTGAGAGAGGCGTTTTCACGAGCTGTCAATGTGACGCACACTCCCGCAGAGCCTATGGTATATTGCGATCTAGACAAACTTACCATGGAGGACATTCTGTCTTTCACAAAACAGGTACCACGCGGTTATCAACGAGAGCTCTTTCTTCAAGCCTTACGCGGAAACACGCTGGTGTACCTGCCCACGGGCTCAGGTAAGACCTTGATCGCTGCTATGGTGCTGAGTTGTATGAAGAAATTGAACCCAAATAAACTGATGGTGTTTCTGGTCGATCGTATACCGCTTGTATACCAACAGAGTGACTACATCAAGTCCCAGGTCCCGGATCTAAGAGTGGAGATCTTAGCGGGAGATGTTGGGCGTTTCCCGGGCGACAAATCTCGTTGGATAGCCACTGTTCAGGCGCTAACGGAAAATAAAATCGATCTTCTTGTTATGACGCACCAGATTCTGCTAAACTTGATGGCCGATGATTGCCCAGTGTTGCGCATGTCTGATGTATCTGTTCTTGTTTTCGATGAGGCACACCACTGCCTTGGGAATCATTGCTATAATCAAATCATGAGAGATTTCTACAAAGTAACCATTAACAGCCGCAAGCCTCTGGTGCTGGCGCTGACCGCATCTCCTGCGGGCGCAGATACACCGCAAGTCACAACAACTAAGCTGGAAGAGCTACTGTCGAATCTCTGCGCATGTGCGCGCATGCCTTCGCGGTCAACGGATTTGGAGGCGTACTGGAACCGACCGGAAACTACGTACGAAATGGTTTCACTGAATACAAAGCAACAACTTTTACAATCATTTGTTGAGACGTATCTCACATCCTTGACAGTGCAGATCGAAGCAGAATTGAAATGCCCACGTGCGCTTGATAAGCTTCGCGTGCTAACGCCTAACTACCGCGGTGCTTTGCGCAAGCTGATTGAACGTTGCTATGGTGATAAAAACCGAGTAAAAGGCCTGGCACTAGGAGAGCACGCCATGCACATGCTGAGTGTGATTGAGGTGAATAACATTTTGGGAAATGAGTATGCAGTTGACTGCCTTGTAGAGTGCATCAAGCAATTGAGAACGGCTACGTCCCCCATGGAACAGCTCAAAAAGAAGCTCATTGGTTCTTCAGAGCAGCTGAGGGTTCTGGAATCTTCGATCGCAAGTCTTAAGCGAGCTTCAAGCTTGTTCTCGTGCAGCGACAGGTATCAGCACCTAACCAAAGAGCTTCAGAATTTCATCCATCGAGTTGAAAGGGACGAAACCTCCAGGGGAATCATCTTTGTCAAGATGAGGAAGACTGCGTACAAACTCTGCGAGCGGTTAAGGCAAGAACCTGGAATTGCCAAAAGGCTGAACCCAGCCTTCCTCGTCGGACACGGACAGGGAAGCGATGGAATGGACTGGAGAGGAGAGCAGGAGGAAATCCTTAAGAAGTTTAGATCAGGCGAGGTTAAACTGCTTGTCAGCACGAGCGTGTTAGAGGAAGGCCTGGACGTTCCGGTCTGTAACCTGGTCATCCGCTTTGACAGCGCGCTGACTTTGCGGGCACTGGTGCAGAGCCGCGGGCGAGCATCCCGCCGTCCCGACAGCCGTTTCGTGGTGATCTGTAGCGACCCCAAGGAGCAAACGAACGCGTTTGATGCAATCAGAAAGGAGCAGAACATGGAACAAGCTATGAGGCGGCAGCAGTATTCCATAACTCGCTCATTACAGGCGGTGCTATTCGGATGCGAGATGAAGAAACCCGACTTGAGCCAGCCATCACATCCAGTTGAACCTCCAAGCATGACATGCGCGGAACACGAACCGGAACCGGAAGCTGAGGAGGATGATGACATGGAAAATGAATACAGCGTGGAGACGATGACCATACATGACAGGGGAGAGAGCCTAGCGTCTGGAGGACCTAGAAAGAGAAGGAAAAAACATATCCCTAATGTCCGTATCGCTATCCACAATGTTGTCTTGGGAGGAAACAACAGTAAAGAAGTTGGCCAACTAACAGAATATTTTGAGAGATATTTCGAAGTAAAATCATTGCATACAGAAAACGTCGGAGCTGGCGTCCCCGGCGTCGGAGGTGCATCGAGAAAGGATAACACACCCGAGAGAAGCCTTTTTTCTGCCGTTATTCGCCTGCAGCTAGAGCCGCTTGAAGATCAAAGATTCCGCACCAAGGAAACATTCTTCACTCATATTGTCCAGTCCTGGTGTTCTCGTCCCATGGCGCTCCGATCCCAAACAGAGAAACTCTGGTTGCGTCGGGATGAACCTTCACGGAATCGAAACTATTCCAAACCGGTGCTGGTCATCAAACCAGACGCCATGTTTCTGGGGTACTTTTTGAATCAAGCCCACTTCTGTGTCCACTGGCCTTTTAACTCCGCTAAGCTAGAGAACATTCGCGTCGCATTCGAGCACGATCTACGAACAATGCTGATTTGTTTCACCGTGCCAAATCCGTCTAGTCAGTGGAAGGCTGATCTGTACAAGCTCCAGGTTCGCTACAGCGAACTGCAAGAATTCGTGTTGGTGGACAAACGGAGCTCGTCTTCGAGTCACGAAATCTTATTCACACTCACACATCCCCCGCGCATTTTCAAAGCGAAAAATTTCATCAAGAAAGAACAAGACGATGACGAGAATGATTTTGAAGAATGGTACTTCGAGGAGAACGACTACGACTTCGACTACGCTCGTGACTTCGCCGACGAGTTCTCGAGCGATTCCGAAGGCGATGAAGCAACTTCCGAAGTCGGTCGTAACAGTGCCGACAGTTCGGAGAATGCCGACGACGATCGCGAAGCTCTCCTGACGAGTTCGGACGTCGCAAGTATTGATGACGTGGTGAACTGGGAACGAGTGACGGAAATCGAAGATAGCGGAGGAGCTTTTGGTTCCTGTTGGGCGTATAATTTAAAGTTCAAGGCCAGCGCATGGAAAGAGATTAAAGAAGTGCTCAGAAGCATTGCGAAGTACGACAAAAAATCCTTCTATGTTTCCATGCGCAAGTCTTTTAGAAGGTTACCAGAGGTAGACATTCCCAAGGAACTGCCTTTTCGCGTCAAATACGCCGCACAATGTGTCCTGAATTCTTTTCCATTCGTCAAGGGAAGAATCACAGCTAAGTTCGCCACTTTGCTTGGAAGCAAACCTGAACAAGTGACGTTGGTTGCACTGGAAAGGCTCGCTGCGGCTCTCCGGCGGAATTCGTTCTGCGATCCAGAAACCAAACTTGGAACTCTACTTGACGAAATGAATTTTAAAGCAGGTGGAATCCCAAAGCAGCTTCTTCCCACTCAATGCGCCATGATCAAACGCATGGTCATCACACCAACTCGCTTGCTGTTCTACACACCGGAAGTCATGTCGAAAAACCGCGTGCTCAGACAGTACAACACCGATCAATTTCTCTGCGTGAACGTCCGCGATGAAGACTTCTCGAAGATTTCTGCAGCTGGCGGTAGCATCGACCACGTGTTGGAGCGTGTGAAGCGGACTTTGGACAGCGAAGTGATCGCGGGCGGCGATGTGTTCCTTTATCTGGGTTCGTCCAATAGTCAGCTGCGTAACCACGGCTGCTGGTTTGTTCGACCCAGTCCATATCCGGATGAGATACGAGAATGGATGGGAGACTTCAGCAAGATAAGGTGCGTGGCCACATTCATGGCTCGTATGGGGCAGTGCTTTTCAACATCCTTGGACGCTGGTGGGCATAGATGTCAATGA

Transcript

OS493_020020-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_020020-T1 global RNA-seq network