Gene detail

Detailed information of OS493_019124-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_019124-T1	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	scaffold_65	884979	1030548	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_019124-T1

ATGGATGCCCTTTTGGACTGTATTGATGAAATAGCCTTAGATGGCCTAGACGGTTGTCCTGTACAGGAGTTGTGGACACATCTGGAAGAAAGAAGGCCACCATTCCCTCTGAAGTTGGATGATACAGCAAAGCAGTTTCTATGGAACGCCATTGTCAGGACACCAGATATTGAGTTTTTTGCTCTTACAGAGCCCTTTTCTCATATATTTGGTACAAAACACAAAGAAGAAACTAAACAAGAGAGTGCAAACTGTGAACCAAAGAACCCTCTTGATCAGTTTCCAGGTCCACTCAGATACAATAATGAGTTTAAGCTGATATCTGACCAAGATACTGGAGTACGAGGTTCCTGTCCCAGCTATCATGTGCGAAAAAACATATCGGAGGATGTGCGAGGCCATTCAAGTGGAGATTGTTTAAACTTAGACACTGCCTATGGAAGGTGGGGAGACTCTCTGGTAATGGTTGCTTCTCAGGAGTTAAGAGAAAAAGCTCTTCTTGGCTTAGAGTGTGATCCTAACATTTTAATCACTGATATACAGTATTGTTTGTTGGAACATGTTGGACAAGCAAGGTACAATGGACGCATGCAAAAAACAATTGGCTCCCGTTTCTTCAAGATTGAATCAAGGACAACCTTTCATCATCTTAAAAAATTGAGAAAAGCATGTCTGGTAACCATGCAGCATATTGTGGTAAGTACTACTGATCCAGTGAACTTCTTGAGAAATGTTATTACAAACGTGGTGAGGTTAAAACGGTTCCATGTACAAGAACACCACAAGTACGATGTTCTGGCTTCTAGACTCTGCAGGCTGTTGTTAGATTCACCAAATCAGGAAATGCCATTGATCGACATACAGAGACATTTTATTGAATTAAAGAAAAAGAGTTTGAGAAAGGTAAGACAATTTCTGCAACAGGCAGGATATGTAGTGGAAGAGAAAATTGCAGTGTCGAGTGATGCAACAGACAGCAAAGATTGCAGCCCTCCAAAGAAGAAGTTGAAAAGGGAGGTATTGTCAGTAGGAACAGCTGTTAACCCTGTTAAAATACGACTGCTCAAACCATTTGTTCTGAAAACTGACATCATTCAGCTGCCAGACGATGAGGATGAAGAGGATAATGATGTTGGCAACAATGATGATGATGATTATAATGATGACGTTGATGATGATGAAGAGAATGCTGTGTGGAATGATGATTACGATTCAAATGTTATAGCTGAGAGGCCATTGATAATGCAGGTGTATGACATAATTCAACAGGCAGGATCATGTGGATATACTTTAACACAATGTAAGAAGGCTTGCAAGCTCCCTTTTGCAGATGTAAGAGCTCTTGTCAAAAACTTGAAGAAGAAGAATTTAATTCAGGAGGTTCATCAAGATGTAGCAAAACAAAGAGTTGCATGGTTTGTAGCTACTCCCTTTGTAAAAAACAACATACAAGCAATAAAAGTGAAACAAGTGCAGGATGAACTCAAACAAATGGAGTCCAAAGCTGCAGGTTTAAACATCTCAAAAGGTATGGATTTAAAAGACAAGAAACCAAAGCAAAGAGCTCTAGCTGAGAGAGTTACATATAGAAAACTTAAGAGGAAAGCATTGATACTGGAATATCTGCAGAAGGTGAAAGTTACAGAGGGATGTTATCCAATTCAAAAGTCTGTGATATCTAGTGAAGAAGAAGAAGGTCTAGAGGGACGAATGGATCGAAAGGTGCTGATCAGGATACTTGATGATCTTTGTGCGCAGGGATTAATCAGGCAACTCACGACTGTGATTCACCATGGAACTGTTTCACAAACAGTGGATCTCTTCCTGCATTCATCCATTACTAATGATGATCCTGAAATAGTACTTACTCTGGAACAGTGTCGTGCTCGATTGAGAGATCAATCCTTCAAAGTTGCAGAGAAAGAAGAACGATCAAAGCAATGTACAGAGGAGAAAGAACAAAAGAAACTTGAAAAAGCAGCTGTAGCTGAAGAAAAACAGAGAAAGAAATGTGAAAGGAAGGAAAAGGATGCACAAAAGAAAGCACAACAGGATCAAGAAAAGAAGGAAGCTTTATTAAAAACCAAGGAACAAAGTACACCTGCAAAAGCTCAGTACAAGGTGCAATCTCGAAGGTATGGCTATTTGCCAAGATTCCCCAGGCTACAGTTAATTCATGAACTGTTGTGGCAGCTTGTTTATGGTCAACTTACTCAGAACACATCCGATATAATTGATGTTGATGGACACAAATCCACTGCTGAACAACAAGTTGACTGTGCTAATCAAGTCACCAGAAACATGGATGATGAGTGGATCAATCACTTAAAACCAATGTCAAAACTGTGTGATGAAGCAAGACAGCCACTACCTGGTTGGTTCCGTATGGCTGATGTGTTATTGGTGATGCCTTTGGACATACTTTGCAAGATTATGGACGTACCAGAGGAGATTAAAGGTTTTGATGAATATGCACTTGATCCTGTAAAAAAGTACATGCTTTTCTGTGACCTTCCACAAACTTTGAGGAGCAAGATCAAAGAAAGCGGAGATATAAGCCAGCACCTTTAG

Transcript

OS493_019124-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04182	B-block_TFIIIC	B-block binding subunit of TFIIIC	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007309	Domain	B-block binding subunit of TFIIIC	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR044210	Family	Transcription facto Tfc3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15180	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006384	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan
GO:0042791	Biological Process	5S class rRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_019124-T1 global RNA-seq network