Gene detail

Detailed information of OS493_017304-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_017304-T1	OS01G0253100 PROTEIN	scaffold_55	818611	835716	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_017304-T1

ATGGCTGAACAAATTTCAAGTTTTCGTCTCTTTCTCAACAAAATATCCAACGAATTAATAACTGAGGAGCTTGACAGTTTAAAATTTCTTTGTATTGAAATTTTAACCAAAGCAAAGTTGGAAACAATCAAGAATACCAAGGAACTTTTTGTGGCCATTTTCGAAGTAACCACAGGCGAGGAAAAGCAGCTCAACTTGTTGAAACAACTGTTTAAAAATATTAGCAGATTGGATTTAGAGTCTCAAGTTGAAACATTTCAGGAATCGAGAAAAGATGCTGGGCAACATGCACAGGTAGATGCTGATAATAGGGTTAATGACAACAGAGCCCTGGCACCTTTGCAATCTAACTTTAGCAGCCAGCCAATTCAACCAGGAAACTCAGTACAGCAAGTAGAGCCTTCTTTACAGCCTGGTTATGCAGCATCTCCACAGGCCATGTCTGATTTACTTGCACATCAAGCTATGCAAGTTGAACCAAGACCAAGAGTCCTACATTCTTCAGATCACATCCCAGATCCAAGGTTTAAACTTCCAACTGAACTAGAATCTGCACCAGGAAGCTCGGTATTACAAGTAGAGCCTTCTTTACAGCCTGGTTATGCAGCATCTCCACAGGCCATGTCTGATTTACTTGCATATCAAGCTATGCAAGTTGAACCAAGACCAAGAGTCCTACATTCTTCAGATCACATCCCAGATCCAAGGTTTAAACTTCCAACTGAACTAGAATCTGCACCAGGAAACTCGGTATTACAAGTAGAGCCTTCTTTTGTACCCTTGGATTATGCAGCATCTCGACAGGCCACAGATGTTTTGCCTCCACTCACACATCAAGCTATGCAAGTACATTCTTCAGGTCACACTCCAAATCCAAAGGAAAAGTTTAAACCTCTAACTGAACAAGAATCTGCCCGGAAGTACCATTCTCAACCCAGTGTTCCATTTGGGCAACAAGAGCAGCCCTCCACCAAAGAAGACGAAAATTTTCAATGGGAAGAGGTACAAGATCGTCCACAATATTCACAAAACAGCTTATATTTCAGCTCTGTGGGAACGTCTGAAGATTCAGGTCAGCATATTGGTCCAGAAAATGAAGCCCAAAATGGAGTATCAAATGGTAGAGATGATCCAGATCGAGGCAGATCAAGGACAGATGGTTTAACTGCAAACACCACCTCTGGTCAAAATCCAAGAATTTCTCAGTCACATGCAGAAAAAGTTCCAGTAGAAAGAGTCTCGTCAAATGATTATGACGTTGAAGCTGCCCAACATTTACACCAGAAATGTCCAGTGGAGATGAGCTATAACTGTATCTCAAGGTACTTCAACAGCAGTGGAAAAAAACTGGGGGAAGGTGGCTTTGGAATTGTATATTCAGGGACCCATCCATTTCATGATCAGAGTGTTGTTGTCAAAGAAGAGTACAGCTCTCATCTTGGACAAGCTTACAGTGCAGTACAATTAAAAAGGGAGAAACGGGTTGGTTATATAAAACATCCCCATCTGTTGCCTCTTTATGCATTTTGTGAGGAGAAAGGAAAACCTCGTTGTTTGATGTATCCTAAAATGCACAGTGATTTACACAGGGCCTTACGTAAGGATTTGCAGAGAAATCAAAGGTTACCGTGGGAGGATAGAGTAAGGATTGCCCTTCACACTGCTAGGGCACTGTTGTATTTGCATACTGAAGTCACAAATGAGAGAAATGTCAGACAGGAAATTGTACACATGGATGTAAAGCCAGGAAATATATTCTTAGATGAAGACTTTAATGCACGTTTGGGGGACCCAGGAATGGCACAGGAGTTGCCCATGGAATACTCTTATGCCTCTATTAGCCAGATTCGTGGAACAGAGGGGTACTTAGATGAATACCTTCAAGATAGACACTTTAAACCTGTCAACGACACTTTTTCCTTTGGAGTAGTGCTGTTACAACTTCTTACACAGAGGAAAGCTGTTGAAAGAGTTCCACCAAACAAGAATGTGCAGCAGCCTTTATGTCGTACTTTGAAGAAAGACGGATTGTTATCAGACCCAGAAAAATTAATGGAAAAGGCGCAACAGGGTGTTTGGCCCGATAGTGGAGATGACAAGAACTACACCAAGGAATTTGCTGCTATTACCATAGACTGTCTGAAACCACCAGACGAGAGAGCTAAGCTGACAGATGTTTGTAAGAGGCTAGAGGGAATACTGGAGAGGAGAGGAGTCAGTAAGGCTTCAAAGCCCAAAGAAGGAGCTCGTTGTGTGTCTTGTCTACTCAACTATCCAGCAAAGTACTTGGGAGTGAGGTCCCGTGGTTGTGATGCTGATATCCATCAGGAATGTAATTATTTTTGTGCGACGTGTTTAACACAAGCTCGGCGTAACCCTCTGGAGTGTCCATCTCATGGGCCAGCTGAACCTCCTATAGGAGGATCTGACATATATGCCGTTCTGGTATGTGGTAATGACCCTGACACTCCACAGGCTGCTGCAGTCTTTCAAAGAGATTTAATTGGCTTTAAAAGTGTTCTGACAGACAGTCGTATTGTTGGAGTCAGGAATGACCACATATTTAGTATTACACCTTCGTCATCATGTGGCACGTCACAAGCCACTCGAGTGAGACAAGCACTTCAGGAATTAAAACAGAAGCTGCTAGGAAAGAAAGATGTGTTTCTATACTTTTACTTCTCTGGCCACAGTGATCAGAGTGGTAACTTGTTGTGTTCATCAGAGAAGGACCGTCTTACAGAGGTCGAGTTGAAAGAGCACTTCAGACATCTCAATGTCAATGAATTCTTGATCATTTTGGATTGCTGTTATGCAGATGGCAAGATTGCTTCTGAACATATTGAAGATGAAAGTTTTCTGGTGCACAAGTCTCCTGATCCTGCAGCAGAACCTGCAGCAGAACCTGCAGCGGAACCTGCAGCAGAACCTGCAGCAGAACCTGCAGCAGAACCTGCAGCACAAATGGCATCCTGGCAGCATCCACTGCAATCCCTATGCAGTAATCTTCAGGCGACAAGTGGTGATGGAAATTTGAAGGAACCTATTTCAAATGCTGCAGTGGACGTAACTGACACTGATTTTGATACGTTAGATGGCAACGTGTTCAACAAGGCTCCACTAGTGCCATTCACAGTACGCCAGTGGTCCTCATCCTTAAGTCAGCAAGAATCGTATGCAAGGGCTAAAGGCAACAGCTTTTTGACGCAGTTCATAATTTGTGGGTTACGTGGTGCACACGAGTGTCCCTTCTCAAACTGCTCATCTTGTGATACATTCAAAGCTCAAGCCAAATCTTTGGGTTACATTAAGGCTGCCAACTTAGAAGACTTCATTTCCAAGCATGTAGAGAAAGCTGCTTCAAGAGCTGGTGGACGGCATCAAAGTCCACGCATGCGAACTGTGCATTCCAAGGAGACAGTACTGGCTTTCTACAGTGAAGAAATCTTGCATGACGAGATAATGTTCAGATCGACCTCCGCATTCTATCAAAGAATCACCATTGACAAGTTTCCCCTTTTACTTTTGGAATTTCAAAAGCTGGTGTTTTCAGAAGTTAAAGGACACCTTCCCATTTGTGCTCAGCCAAAGCATCTTCAGATTCTTTGTGACGATGAAGAAATCGATGCAGCATCATTTATTGACCTCCAGGACTTCCTCAGACAAGGATATGACGTCAGATGCCAGTTGAGGCCTTGTTCTAGCATTGTTAATGGCCCAGTAGTTGTTCAGATACAGAATTACAAGGATCAGGTCATAACTCTTCTGACTTCACTTCAGTTGTCAAGAAACCAGCTGGAGGACCAGGATACCTTTGAGATGGACACCACCCAGAAAACATACACTGCAGAAGATGTCAGAGAGTGTTGTGAGGACCAGCCAAGCCTCTATGATCTGAAGGACACTTCTGTTGGAATCTCAATTGTTGTTATCCTGACGGAAGCATCTCTGTACCCAGGGAATTTAACGATATGTGTTTTGGATGACAGCATAGATTGCTGTTTTGCCAAGGCTTCAAATTAA

Transcript

OS493_017304-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF01335	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR27001	OS01G0253100 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_017304-T1 global RNA-seq network