Gene detail

Detailed information of OS493_016986-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_016986-T1	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	scaffold_53	1790584	1801919	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_016986-T1

ATGCCATGCTTAACTGATTATTTAACTCCACATTTACTCTCCTTAGTTCCACGCACAGTTGTCATTAACAAGCCAAACTCAAACTTGACGTTTGTTACTGGAGATGCTGTCATTCTAACTTGTGTGCCGGATGGTGATTTTTCCTTCACTGTTGTGTGGCGAAAGGATGGCAATGACCTGACTCCACAAGCAAATGATTCCCTGTTACTTCATATCCGTAGCAGGAAGGACAGCGGGAGATATGAGTGTGTCGCCAAAAGCAAACGAGGAGAAGAGGTGCTGGCCATAGATGTGATTGTTTATGACAAACCATCTGCTACAATCGATCCCTCTACTAAGACCTATCAAGCGGGAAACAATGTGTCAATCAAATGCCAGGTGAATGGATTTCCAGTTCCTTCCCTTATGTGGTATAAAGATGGACTTCAACTGGAGTTAGATGGAAGGATCAGCGTAAACAACGATGGTGTGCTATTTATCAGAAACGCACAGTTGTTGGATGCTGGAGAGTATGAATGTGCTGTGTGGAACATTGCAGGGCAGAGCCAAGCCACTGTCAAGCTGCTATACACTGTACCACCGTCAGTATTTGTAGACCAGGAAGAGGTTACGGCTAATGCTGGCGAGACCATCGCAGTCCAGTGTACGGCAAATGGCACACCAAGGGCACAGATTACATGGTATAAGCAACATAGCAAGATAACTGCCAACCGTCGAATCGCAGTTAGCAGCCAGGGGCACCTGGTGATCAATGCAGTGGAGTTGAGTGATGGCGGATATTATACGTGTCTGGGTAACAATAGCATTGGTCAGGACTCAGTTACCATTATGATCCATGTGCAAATCCCTCCACGTGTGACAGTAGACGAGGAGGACGTTGCTGTGATACTTGATGACACATTGGTATTACAGTGTACGGCAGTTGGTGTTCCAATCCCGACCATCACCTGGACAAAGAACAACCAACCCCTCCAGACGAGTGACAGAATCACCATCACTAATGACGGAGCACTGATTATCAGGGATGCTATTCCACAGGATGTAGGGGAGTACCAGTGTGTAGGGAGGAGTCCTGCTGGAACTGCTACGGCGATGGTCATACTCTGGGGAGAAGGAGTTCCTTCTAAGATAACGAGCCCTCCTTCTGACAAAACTGTCACCTTTGGTGGAAATGTGACTTTTACATGTCGCGCTGAGGGAGTACCTGAACCACAGATCACGTGGCACAATAACTTAGGAATTACTGCCGACACAGACCCTCGAGCTACAGTACTGCCATCCGGTGACCTGTTCATACAGAACATAGAACTCAAGGATGCTGGGAGATATGTGTGCGTGGCAGAGAACAGTCTGGGGAGAGATACAGCCCAGGTCACTCTCATTCTTACAGGCCTTACTCCGCCCAATATTATAAAACCAGACAAAACCACCATTATTAGTGACAGAGGTGGAACAGTTGAGCTTCAGTGCCCAGCAATCGGTAACCCTCAGCCCGCCATTACATGGCGTAAGGATCATCATTCAATTGCCATTGATGGCATCAAGCTCAGACAGAAGGATACAGGGGCATTGGTGATCACTTCATTGCTACCTGTAGATTCTGGGACATACTTGTGCACTGCAAGGAACCCCACTGGAGAAGATCGTCTCATTCTCACACTCCATGTGTACAAGATTATCAAGCCACCTCCAAACATGACAGTAGATGTTGGAGATTCCATCCTGCTGGAGTGTGTAGCCAGAGGATTTCCTATTCCACGCATCCGTTGGTTCCTAAACAACAAACTCCTTCCTTACAATGGCTCTGTTATTGAAATAGCCGAGCTATCCCTGCAACACACTGGTGTCTATCTCTGTGTGGCCGAGAATGTGGCTGGAAATGCAACCGCTACGGCCAGTCTTTCTGTCATGGCTCCACCTAAAATATTTGAGCCCAAGAGGTCAACTGTAAACGTGTTATCTGGAAGTTGGACAGAATTACAGTGCAATGTAAGTGGTAATCCCAAGCCAAAGGTGACCTGGTTTCTACACGACCTGCCCATCGATGTGAATGAGTCGCCTAAGTATCTCATTCTACCATCGGGTAGTTTGCGTATATTTGGTGTGACACCATCAGACAGCGGAACATACTCTTGCATGGCGTCTAATCCACTCGGCGTAGCCCGTAGGCCTGTAGAGCTTTCAGTTCAAGTTCCACCTGAGATCGTCAAACATCCCCAAAACATTTCCATCGACGAGGGAGATACTATCATCTTACAATGTGAGGCGCGTGGGTTCCCTGTGCCACAGATCACGTGGTATCTCAACGACACTGCTGTACTTACGAACAGTTCAGTAGTGGAAATTATCGAAGCCAGAAAATCATACCATGAAGGTCTCTATCGATGTGAGGCACGGAATCCTGCAGGGATTGTTACAGCCAGTGCATATGTTACAGTAGGAGGAAGAGACAAAAATGTTGCTCAAACAGGAAGGCCTGAATTTGTGCACACACCACAGGACACTGAAGTGGATGCAGGTTCAACGTTCGTCTGGGACTGTACAGCCACAGGCAACCCAACACCCGTGTTGTCGTGGACAAAGGATGGTACAAAGTTTGAACCTGGTTACCCAGAGCATATTCGCGTCCTGGCCAATAACAGCTTAGTAATAAGAGGAGTGAAGCCAGAGGATGCAGGGCAGTATCAGTGTCATGCTAGCAATGGCATTGGGGCAGCACATGTGGTACAGGCGACACTCACTGTTAAAGTTAATGGCCGGTGGAGTGAGTGGCAAGAGTGGGGGGCCTGCAGTAAAGCGTGTGGATCTGGGTCCCAGTATCGATTCAGATCATGTGACAATCCTGTGCCTAGTAATGGCGGGAAACTATGCACTGGGAACTTCGTACAATCACAGCTCTGTAATGCGCATTCTTGCTCTGTTGACGGAAATTGGTCGGTGTGGACAGAATGGACATTGTGCTCGAAAGTTTGTAATGGTGGAGAACAAACAAGATACCGGGAGTGCGATAACCCGGCACCACAGCATGGTGGTAAGGACTGCCTGGGCCATAAGAGGGATTCAAGAACTTGTAACTTTTTCAGATGTCCAGACGGCGTAGAAGTCGCAATCGGCCAAGTCCATGGAACAGTCAATAACGTCATGCTACCAACCCTTTTCCTATTGGCTAACTTCACCAAGACTCCAGCCAATGACACTCAAGTATCCTGTTCAGTCAGTGGCCTGCCTGGACCAATCAGGAACTGGCTCAAGTCCGTGTCAATCCCTTTAACCGCCCCAGTCTACTGGGCTACAGCGGGAGAGAAGCTGGTGCACAAAATGGCTTGA

Transcript

OS493_016986-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR009138	Family	Neural cell adhesion	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_016986-T1 global RNA-seq network