Gene detail

Detailed information of OS493_016792-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_016792-T1	NUCLEOSIDE DIPHOSPHATE KINASE	scaffold_52	1823088	1862639	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_016792-T1

ATGCTGTTCAAGCTGGACTTGTTGATGAAATCATTCAAAAGGTTGAAGAGTCTGGTATGGAGGTTTGAAGAAGGAGGAAAAGATTTTGTCAAAGAAGAAGCTGCAGAGTTTTACAAACAGCACGAAGGGTCTGAGCACTTTGAACAACTGGTGGAATTTATGTCCAGCGGTCCTTGTATGACTTTGTTGCTGAGCAAAGCTGGAGACTCCCCTGATGTTAGTGATGGCACTATTGAATATTTCCGTGATCTCATTGGGCCAAAAGATGTCAACATTGCTAAGGAGGAGGCTCCAACCAGCCTGAGAGCTCTTTATGGAACAGATACTGTGATGAATGCAGTCCATGCCTGTGACTCTGCTGAAAGTGCAGCCAGGGAGCTTGCCTTCTTTTATCCTGACTTTGTGGCTCCTACCGTAATCCAAAAGAGAAAGAAGAAGCGGTTACAGAGGACTCTTGCTCTCATCAGGCCTGATGCACTGCGCACAAGTAGAGAGTCTATCCTTGGAAAGATTCAAGAGGCAGGGTTTACTATTGCAATGTCAAAGGAAATAACACTTTCAAGGGATCAAGCAGAAGCTTTCTATTCAGAACATAAAGACTCAGATTTCTTTGAAACTTTAGTTACAAACATGGCCAGTGGTCCAATGATGGCATTGTGTCTGGCTCGGGAGGATGCTGTGGAAGGTTGGAGAGAAATATTGGGACCAAAGGAGATATCAGTAGCTGCTGAACAGGCTCCTGACAGTTTGAGGCATCAGTTTCAAGTGGAGGACAGTCCTATCAATCCTTTACATGGCTCAGACTCCACTGAGACTGCAGAGAAAGAAATCCAACAGTTCTTCCCTGTTCAGTCCACTGTAGCAGTTATTAAGCCTGAAATGGAACCTGATAAAAGAGAGGAAGTAATGCAATGCATCAAAGAAGCTGGTTTCAAGATTCAGTTTGAAAAAGAGGTGACTCTCACTAAGGATTTAGCATCACAATTCTACCATGAACATGAGGGAAAAGACTTCTACGAAGGCCTCACAGATTATATGTCAAGTGGTCCTACACTATTTCTGGTCCTGACAAGAGAAGATGCAGTCAGTGGTTGGAGAGCTATGATGGGGCCCACTGATCCACAACAAGCCCTAGACCTTGCACCAAACTCTCTTCGTGCACAGTTTGGTGTAGACACAATGAAGAATGCTGTGCATGGCAGTTCTACTGTGGAGAAGGCTGAGAAGATTATTATGGAGTTCTTTCCTGAAGTAGAAATTTTACCTGATGGAACTGTCAAAGTACCACAAGTGGAAGCTGAAGGTGGAGAGGAGGGAGTGACACAGGACATAAAACAAAATCAGCAACCTGATGAGACATTCAGTGAACCACTGGGAATGGAAAATAGTAGCATCCCCAGTGAAGCCATTAAAGCATCATCTGAACTTGATGACCAACACAGTGCATCAAGAGCTCGCCTCAACACCAAGCCTGAAGGAGAACTGAAGGGAGCCTGGGTTCCACTACAAAGTGATGAAAACCAGTGGCTTCAGGTGGACTTTGGGAAAGTAACAAGGCTGGTAAAGATAGCTTTGCAGGGAGAGGCTGGCGAGTCATCCCGTCATGTCAAAGAGTTCAGTGTCTCATATAGCCTTAGTGGAGAGACATTTATACCTTATAGAGAGGACAGCACTGAAAAGGTTTTTGAAAGCAATTCAGACCAGGACACAATTGTATACAACAGTCTTAAGAACCCTGTTATAACCCAGTTCATAAGACTAACTCCAAAGACCTGGAACGAAGACATTGCAATCAGAACTGAGATTTATGGATGCAATGCAGATTTATATAGTGAACCACTGGGAATGGAAAATGGTAGCATCCCCAGTGAAGCCATTAAAGCATCATCTGAACTTGATGACCAACACAGTGCATCAAGAGCTCGCCTCAACACCAAGCCTGAAGGAGAACTGAAGGGAGCCTGGGTTCCACTACAAAGTGATGAAAACCAATGGCTTCAGGTGGACTTTGGGAAAGTTGTTGAGATAACTAAAGTTTGCACTCAAGGTGGTGGTGATAGTGTAGGTCATTGTGTTAGTAGCTATATCCTGCTGTTTGGTGATGACGGAGAAAACTTTCAGGAATATCAGGAAAATAATGAGACAAAGGTGTTTGAAGGGAATTCTGATGGTGACACGGTGGTTAGTCACTGGCTAGTTCAACCTGTCAGAGCATGTTGCTACAGACTACAGCCTAAAACATGGAATGAACAGATTGCATTAAGATTAGAGCTGTTTGGCAAGTTAGCATCAGATGAAAAACAAGATAACCTTCAATCAAAAACCCAGATGAAAATGTACAGGACAGAGCTGAAAGTGTAA

Transcript

OS493_016792-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00334	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001564	Family	Nucleoside diphosphate kinase	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR034907	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036850	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46161	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241	Biological Process	CTP biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_016792-T1 global RNA-seq network