Gene detail

Detailed information of OS493_015557-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_015557-T1	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	scaffold_47	473899	504763	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_015557-T1

ATGGGACAGTACGTTGAGACTTTTGAACACAACCAGATTGATGGAGAGCTTTTCATAACAGTAGATCAGGCGATGCTAGCAGAGCTTGGATCATCTACCCGCTCACATGCAACATCAGTTGAGCAGCATCTTGCCAGCCGACGACCGCTGAGCTGCTTTGGAGCGCTTTCGCATCCACAAAGCACCACATCGCTAAAGGATTCAGCTACGACTGAAGAATTTTACAAGCAGGCACATAAGGTATTCTCAAAGACGTGGGGAGGAAAAACATACGAGAAAGTGTTTGAAGGATCAAGTTTGGTTGACAGAGTAATAGAAAAATCACCAGACAGGTATTCCACTCGAGACAAGGCGACAGAGCTTCTTCAGGGTATCCTCAAAGAAGGAATTATCAAAAGCATCGGCAGATCGAGCCTGTTCGAGGACGGTGCACAGTTGTTTTATTGGACTGAAACCTCGCACTCACCAGACAACATGGCGACCACAGCAAGAACACAGCGCTTGAACAAAACGAAACAAGAGGAAGCAAAACCAGCATGGGCAACCCCTAACTTAAAGAAAACAAGCAGGCCGGGAGGAACCTTGCCGTCTAAACGGATGGAAATTAACACTGCTACACGTGTCACTCAGAATGCAGCCGCGGCCGAAGGAGCCGCAAACAGCGACAAGAAAACGAATGCTTCTAAATCCCTGTCCAGAGGGTTAGCAGCTCTCCTTGAACGGGATCAATCATTTAGTGCTCAGAATGGTCAGGATGATAAATGTGAAGATAAGAAAGAAGAGGAGACAGAAACAAACACGCTTAACGGTGCAGTAAAAACCAGGGATGAACAAGCTAAGCCAGAAAATTCCAAACCTGAATCCAAGCACTCTTCTCCTCAGAGGATGGTGCACAAGGCTCCGCAAGCTCAACAGGTTATAACCGGTTCTGTGACTGACGATTCAAAGCCCTCTTCTACTCAGCGAATCATGCACAAGGCTCCGCAAGTTCAACAGCGAATCATGCACAAGGCTCCGCAAGTTCAACAGGTTCAAACCGGTTCTTTGACTGACGATTCCAAACACTCTTCCACTCAGCGGTTAGTGCACAAGGCTCCGCAAGTTCAACAGGTTAAAACCGGTCTTGTAACTAACATAGCAAAACCGACCCATCAAAATGGTGAAGTAGTTCCCTTGAAAAAAGCCGTACAAGAAGGAAAGGTTACTGAAGTGAAACCCGCTACTCAAACGTACGTAGCTAAGGCTCCCGTAATTGTTCAGGGAAGGAAGATTGGTCCCGAGGGCTTTCCCGAGACGAACAATGAAGATAATACCACCAAGAAGGCTGACATAATAACGCCATCTTTAAAAACATCGCCATTTATCAATCAAAAAGAAATCGAGGAAAGCGCTGCTCCTAAGGTGCTGAAAAGCTCGCCGATCAAAATGGCCAATGGTGTTCATGAGGCCAAGAAAACTGAAACTGTTACAGCTACAGAGTCATCTGCTAAGGCAATAAACGAGAATAAACACACAGACGTTGAATCGGCTGACAACGAAACAGTTGATTTCCTTAGAAAAGAAATTGAACGAATCAAGGCTGAGCATGAATTAGAGATTACTAAATTGAAACACCAATTTGAACAAGCAAAAGAGATGGCAACCTCCGAAGGAACAGCAGAGAGTGAAGCATCTTCCGACCTCTCCAGATCAAGCTCAGTGTCCAGTTTATCAGCCTCCGCGCCACCTCCGCCTCCTCCTCCGCCCGGCCCTCCCGCTCCTCCACCACCACCACCCCCTGGGTCAATGAGTCCTCCTCCACCACCTCCCCCTGTTCCTGGTGGTGGGCCGCCTCCTCCGCCTCCTCCTCCTGGCGGTCGTCGCATTGGGGGAGTACAGCCGAAGAAAGCTGCTATCAAACCCGATGTGGAAATGAAACCGTTGTTTTTGGACAAGAATTTTAATATCAGGTTAGTTTTGTGTTGCCTTAAAATTAAACATCAAGATGAGCAAGACGGTGGAGACTTAAACAACAACAAACCCATGAACACCATTTGGAAACATGTGACGGAGATGGACTTTAACAGAAAAGAATTCCAAAAGTTGTTTGGCCGCAAAACTAGCAAGAAGTCTAAGGGCGATCGCAGGAGCACCCTCAAGGATGATAGCCACTTTTCACACTCCAAAGGACAACATGCGGCCAAGTTGCTTGATAATGGACGATCTCAGACCATTGGAATCATCATGAGTAGCCTGAGTTGTCAACTGGAAGATATTAGAGACGCCATCTACAAAATGGACACCTCTGTTATCGACATGGACGGATTGAAAGCGTTATACGGAATTCGCCCAAAAGCAGATGAAATTGAACTGATTACAAAATACCAACAAGAAAACCCAAACGTCCCTCTCGACAAACCAGAGGAATTCTTACTTCAAATACATAAGATGGATCACTTTGCCGAAAGACTGGAATGCTGGTTATACAGAAACAAATTCACAGAAACCTTAACCGCCATTGACAGAAGATTATCTGCAATATGCGAGGCCAGCAGTTTACTTCGCACAAACGAGGATTTGTCATTTATTCTGTCCATAATCCTGACTCTTGGTAACTTTATGAATGGAGGAACAAACAGAGGACAGGCGGATGGATTTCAGTTGAGCGTTCTTAATAAAGTCAAAGATGTCAAAACGCAGGATAACCAAACGAATCTGATGAAATACATTGTACAAGTGTATTGTGATAAGCGGCATGGGGGCGAGCGAGGAGACTTCAATTTACCAGACCCCTACTCCATCCTCGCGGCTGCTCAGGTTTCTTTCAAGGATATCAAAGCAGAACTCGCTGAAGCTAAGATATCATTAGCAACCTGTAAAGCCAAGTCTGAGATGGTACTGGGAGGTGACAATTCAGCACACCGGGAGCCGTTTGAAAGTTTTGTGAAAGAATATTTGCAAACTGGAGAAAAGGAACTTGCTCGCTTGCAGAAAAAGGTGCAAGGAACAACGGAAGATTTCAAGGAAGTTGTAGATTATTTCCAGTACACCGGAGAAGGAGAAGAGGTGACTCCGCCACTGTTTTTCGGTATCTGGGGGAACTTCTTGGAGGTTTTCAAGAATTTTTGGAAGGCCGAACAGATTAACTTAGCCAAACGGACATTCTGCAATGCAGACCATCTCAAACAGATAAGAGCGACGGCTACCAAGTTCAAGAAACGCCGAGTCAGTGAGATAGAAGATCCCAGGATTCGAACATTGACGTCATAA

Transcript

OS493_015557-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF02181	FH2	Formin Homology 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591	Domain	DEP domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR015425	Domain	Formin, FH2 domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042201	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005856	Cellular Component	cytoskeleton	Interproscan
GO:0030866	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_015557-T1 global RNA-seq network