Detailed information of OS493_013998-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_013998-T126S PROTEASOME REGULATORY SUBUNITscaffold_39572166573024-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF02933CDC48_2Cell division protein 48 (CDC48), domain 2DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR004201DomainCDC48, domain 2Interproscan
IPR009010Homologous_superfamilyAspartate decarboxylase-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029067Homologous_superfamilyCDC48 domain 2-like superfamilyInterproscan
IPR050221Family26S Proteasome Regulatory ATPaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR2307326S PROTEASOME REGULATORY SUBUNITInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008540Cellular Componentproteasome regulatory particle, base subcomplexInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0031597Cellular Componentcytosolic proteasome complexInterproscan
GO:0036402Molecular Functionproteasome-activating activityInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0045899Biological Processpositive regulation of RNA polymerase II transcription preinitiation complex assemblyInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

Expression pattern
 1. Expression trend for OS493_013998-T1 global RNA-seq network
TOP