Gene detail

Detailed information of OS493_013573-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_013573-T1	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	scaffold_37	1587344	1605610	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_013573-T1

ATGGCTACGACTAACCTTCCAGCTATACCGCATCCACTGTCGCGAATGGAGGATCCTATGAATCTAAACGTTCGCGGTTTGTCCCGAGACGGATCGCGTGTGCCTTCGCGGCAAAGTTTGACTTTCGCACAAGATCTTGAACGTGGAAAACTCAACGCTTTGCGACCGATCACGGCAGATCAAGTCCCTTGGAGGCTAACACGGTCCTCGAACGGTTTCGGAGGACAACACAGCCCGAGACATAATGGATTTTCGGGCATTCCAGAAGGTATTGAAGTCAAGCGAGCAGAAGATCCCAACAAGCCAAGTATCCCAATTTTCGTGCGGGCATCATCACTTCAGGGTCCCGACAAAGCTTCAGTTGATGAGATTGAATTTATGTTAAGAGAAAAAATGAGAACTGGATATTATACAATAAAGAATACCTTCAAAGAGTTTGATCCAGAAGGCAAGGGAATTGTCAGCAGGGAAACTTTAGCAAGGATTTTACAAAATTTCTTGTCAAGGTCAATCAGTTTGAGCCAGTTTAACAAGCTTATGGTTCGATTACGCTTGGACCACAAAAAGATGATATCATATGATGAGTTCTATGCTTCCTTCAGACCGCCGAAGAAAGCAGATGAAGGTCCTGCTTGGCTGGAGTTAGAAAAACCAGATTTGAAATACATGTCCGCCGCACAAGTTCATGCACACCTCAAGGAAAAAGCGAAACAAAGGTTCTTGGATGTAGCCGAACTTATCCCGCAAGTGAACCCGGGAGGCACGGGACGAATTCTAAAACCCGAGCTGAGAAACGTCCTCAACAAGATGGGATTCTACATGGAGGATGACGAGTTTGAAAAACTCTGGCTAAAATACGACACGGAGAACTATGGAACGATTCGAGGCGAGAGGCTAATGAGCAAACTTGGTATTGCAATGAAGGAGACTGGCTCTAGAGAAGAGTCAAGCTCTCCGAAGAAACTTGAAGTGGAAAGGAAACACTCTTTAGATGTGGAGCGGTGGTTGAAGGGGAAATTCCGTGAGGGGTTTTCCGACATGAAGCACGCGTTCATGGAGTTGGATTTAGACAGGATCGGGAAAGTGAGTCGAGATGAATTCAGGCGCGTCATGGAAGATTTTGGATTGCGCTTGAACACTGACAAACAACTGGACGACTTCCTGGCGAGATGCGGAGTTGAAGCATCGAATGGCAAGATTTCTTACAAGGAGTTTCTTCGCCGCTTCCAGGATCGCAGTGAACAGGGAATGCCACACAAGATTTTAGCTAATCCACTACACAGGTACCATCACAGTGAGGCTGGAAGTAACTATTCAACGACTTCTGCGATAGAAGCGAGAATAATGGACTCGTTTCAGAAGGACTTCTTAGCACTGCTGGGTACATTTCACAACATTGATCGCAAGGATTCTGGTCTTCTGACCCAGCAACAGTTCCGCGCGGCCATCGAAGGAAGATTCGAGCTCAACATGTCCGACCAGGAGTTTGATGCGTTTCTAAAGAAAATTCCTATTGACAGCGACGGGATGGTGAAATATGTTGAGTTCATGTCCAAGTTTGATACTTTTGAAACCAAAAGCCTGTTTGACCGCTCCAGTGTCATGGACCGGAAGGAAAGTCTCCCTCCTCTACCGGAAGCTGACAGCCCACCGATGTCGCCAAGGAAACAACTTCGACCAATCAAAACCATGGATTCGTATAATAGCCAAGAAGGGCGTGGCGTTGAGGAATTGAAAATTCTTATCAAGAAAGTGCTGCAGAATAACTATCAGGCATTTGAAGAGGCATTCTATGAACTTGATGAATTGAACAGCAAGAGAATGTCGCCAAACGTGATGGTTAAACTTCTGAAAAAGTTTGGTCTTCCTCTCAGCCGTAACGAAGTAAAGCGTCTCTGGGATACACTGATTACGGACCAGAGAGGTTCTCTTGAGTATTGGCAGTTTGTACGGACATTTGGTTATTCATTGGACTCTGCAGCTTTTCCAAATGCCAAAGTTTCGCCACCCAAGAGAGGTGACAATGATTTCATGATGCGCTCCAATAAACTGAACAGTGACAAACATTTACTGCATCATCTGCTAAAATCAAACATTGACATCCACTGGGAGACGCTCTGGAACGAGTTCACTGCTATTGACCGACAGGGCACTGGCACCGTGTCAAGGAAAGATTTCAAGAATATTTTGCAAGATATGTGTGTTGAACTAACGGACTACGAAAGTCAAGTATTGTGTGACAAGTTTGATCCCAAGAAAGAAGGAAGAGTAAACTATATGAAGTTTTTAGAACCATACTCCAAACAGCGAAGGGCACATCGCCATGGACACAATATGCAAGCTGTTATGAAGCATCCACAGGCTGAACTGCCAATGGATGATATCGTTCAAAAGCCAAATAAAGGATTGTCGACTGTTACAGCTAAACTCAGGGAAAAGTTGTCAGGAAAATGGATAAATCTTATGCGAGCTTTCAAGAAACTCGATAAAGACAACAAAGATTTTCTCACCCTTCAAGAATTCCGCCATGTTTTGGAGCTCTGTAACGTGGTACTGGACGAAGAAGATATTTATCACATTTTAACGGAATTCGACGAGAAGAACGGAGAGAAAATAAGATATACAAAGTTCTTGGACAAGATTAAGTAA

Transcript

OS493_013573-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08976	EF-hand_11	EF-hand domain	Domain	Interproscan
PF13405	EF-hand_6	EF-hand domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015070	Domain	DJBP, EF-hand domain	Interproscan
IPR052603	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_013573-T1 global RNA-seq network