Gene detail

Detailed information of OS493_013563-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_013563-T1	PLAKOPHILLIN-RELATED	scaffold_37	1449179	1464353	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_013563-T1

ATGGACGAAGATATTTCTAGACATCGCATTGTTGTTCTTGGAGTTGATGACAACTCGGAATATGACGTGGAGTTCAAGACAGCTGCAGATGATAACGCCGGGACAGACGCCAATGTGTATTTCCAAATGATCGGCGAGGAGCGCGAGAGTCAAGAAATCCAACTCAACAACAGAGGAAAGGGATACTTTAACCGAGGACAACTGGACAGGTTCAGAGTCCGAGCTAAGGACGTTGGACGGTTGAAAATGCTGCGTGTAGGTCATGATAATTCTGGCTCGGATTCTCGGTGGTTGTTAGATGAAGTCGTTATCTACTCTTTGGCTCGTGGTGAGCGTTATGTGTTCAAAGGCGGCCGCTGGATCGGTGGAAGAAACAATGAGATCGACCTTCCACTAGATTCATGGAACTACGGGCAACTAGTTGGTCAGGAGCCGGATATTCCAGATTTAATTGATTTCATGCAGTCTGGAGACGAAGTAAAGATTATCAATGCTGCTGGATACTTGCAGCATTTGTGTTATAGCAAAGAATCCGTGAAGGATAAAGTCAGAGAGCTCGGTGGTATTCAAGTGATAGTCAGGTTATTGAGGCATTATGAATGGCGTGTCAGATATGCCGCCATCTGTCTCCTCAGGAATCTCTCGTTTAGTATGAAACACAACGCCAACAGGTTAGCTATAGCGGATTGTGGTGGAATTGAAGCTCTAATTGAAATCTTACAAGAAACGGAGAAGACAGAGTACAGAGAAGGAATTTTAGGAGTTCTGTGCAATTTATCGTCTGTTGAGTCGCTTCGTCTAAGAATCCTTCTCATATGTCTCCACATCATCGTCATCATTATCATCATACCGTACTCCGAGTGGACAGCTTTAGCGGCTCGCGAGCAGCCGCCTGTGAGGACCGAACCCTGGGCAGCGGTGCTCGTCCATGCTACCAGACTCGTGCGCAATCTGTCTTCAGCCGGTACCAGGGCCCGGCAGGAGCTCAGGGACGAGAAAGACTTGGTCGACTGTTTGGTGTGGATTACTAGAGTTGGTGTCAAGAATGAACAGTATGATAATAAGTGTCTTGAGCATTCTGTGTGCACGCTAAGAAACCTGTCATACCGGCTTGAAAGCGAGATTGACAGGGATCGTTATGATGACGCGGACGTTGACGTGGACCCCGCTGCAGTCAAGGAACAACAGAGCCAGGGCTGTTTTGCAGGGTGCGGTGACGTACAACAGTATCATATGCTGTTACGTAAATCCAAGAACATTGAAACGTTAGAGGGGTCAGCAGGAGCTCTGCATAACTTGACGGCTTGCTCGTGGAAGTGGGCGATCAAAATCCGTGGAGATACGAGAAGAGCACAAGCGATTCCACAGCTTGTTGAGCTCTTGAGAATCGACTACGACCCAACAATCCGTGCGGCAGCCATTGCTCTTCGCAACTTGTGTGTGGACTCTGAAAACAAGAGGACTGTCGGCGAGAAAGCGATAATCCACCTGGTCCACAGACTCCCGACAGGGGAGGAGGAGGAGCGACTTGTACGAGATCCAACAGTAGCCTCGCTTCTGTGTGCTATTTACCAGCTCACCAACAAGAACGACAAGAACTCCAAATATCTACGTAAGACGAAAGGTATTCAAAAGATGGTGAGAATAGCAACAGATCAGAACAAGCTGTACTCGCCGCGAGTCATAAAAATAGCCAATCAGGTTTTAGCGAATCTCTGGAGCCATAGCCAACTACAGCAACAGATTAAGAACGCAGGATGGCAATACGATGCTAACAAAAACGCCGAACTAGCTCGTGCGCCGATGGATTACGAAGGTACCTCCCTCCCTCAAACACCCGACGATCGGACCCGAAGAGATCCGAACAGTGCTCGATTGGAGAGCGACGACGATCAGTGGCGAGGCGGCAGTCGTCGGCCAAGGGACAACTGGGGAAATGTCAATGGAGGGACTGACATCTCTTCGGAATCAGATAGGCAACGTAGCTGGGGTGAAAGCTTGAATCAGATCCCCCCGCCGTACGCATCAGATGATAACTATTCCCGGGGGAGTCGGTCACGGGATGACCTCCCCATGGAGGTGATGTCGACCTCGTCGCGACCGTCAGCCGCGAATTCAGTGCGAGACGAGAATGACAACGCGAATGACAGGACGCTCAGGTTAAAGGACAGTGGGGGGTGGGGGTGGGAAGAACGAGGACCTGTGGGTGTAAGACTGTGGGGGAGGGTATGGTGTAACAATAAACAGGTTGTGTTTATACTTGCATAG

Transcript

OS493_013563-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR028435	Family	Plakophilin/Delta catenin	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10372	PLAKOPHILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_013563-T1 global RNA-seq network