Gene detail

Detailed information of OS493_013426-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_013426-T1	NOTCH LIGAND FAMILY MEMBER	scaffold_36	2326100	2334664	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_013426-T1

ATGAAGGACGGTCGCTTTGTCTCCAACTGGAATGATCATGGAGATTACGTCATTGAACACGTGACCGAGGAAGACCAAGGCGGCTACTCGTGTCTGGCTTCAAGTTCAGCTGGTTTGATACAGTCTAGTGTGGCGTACATGACAGTGAATGATCCGCCAAAGATCGTGAAACACCCTGTGAACAGCAGTGTAGAGCTGGGTGGTGAAGTGACTCTGGTGTGCAACGCATCTGGAGACCCACAACCGGCGTTCAAATGGTTCAAGGACAGTGAAACTATACCAATGGTGGAAACAGATGATATCAATCCTTTCTTTCCAGAGCTTGTTGTGAAGAACGCGCTCGCTCAGGACGAGGCTCGATATTTCTGTGAAGCGACCAATGATGCTGGTAAAGTGAGATCTAACTGGGCGACACTTAAAGTGTTCGGCCGAGAGGCACTTGTTTCTATGACGATTTCTGTCACGAATCCGAATAAAGAAGGAACTTGCCAGATATTCGATATCATAGCGTTTATAAGACTTCTTAGCAAGGCATTGAAGGCGAACGTAGAGGTAACTGGTTTTTCGGCTCCCAAGAGATGCGAGGAACACCCATGTAATTCAAATCCCTGTCAAAACGGAGCTGTCTGTTCCAAACAAAGCTCTCCATATAACTGTTTGTGTAAACCGGGATGGTCTGGTGACCACTGTGAACTGGATATTAATGAATGCAGTGGAGATCCTTGCTTTAATAATGGCTCGTGCACCAATACAGATGGTTCGTATAAATGCAACTGTACATCATCCAAGACAGGCAAGAACTGTGAGTTAAAGAAAGCAGCATGCGACAGCAAACCATGCAAAAGCTCTGAAATCTGCGCGTTGTCTGAGAGATCACTCGGTGGATTCCAATGTGTAGATGAACAGCTTGAGATGGTCATGGTGTTGGCTGGAGACAAACGCGTTAGTGTGTTTGATCTGGAGAAAGAAATTGAGAATGTAATCAAGTCTGCTCCAAACAACGCCAATGTGAGTGTTATTGGTAGGAGACTACGAAGGGCTGATGTCAGTAAATTGGATTACGGCGCATGCTCTGTCCGTATCATCAGTTACAAGGAAGGAAAGGTTAATTTTGTACTGCTGTGCCCACCGGAAATGAAACCTATTGAGCCGCAAAATGCTCAACAGTTTGTGTGTGGTTTGTTGTTTGACGCTGATCGTTCATCGTCTTGTGGCGGAAGTGACGTAATGAAGACGCCAATTCCACCAACCACCAGTGCTCCTCTTGAGGCAATGGAAGTCACGTTAACGCTATTTGCTCGAGACGAGTCTGGAAGCGATTTGGAAGCGAGTACAGTTATTGAAATGATCAACAATGGAGAGGCAGAGGAGTTAGAACAATATGGCTTTAAAGTGGAAAGTGCTACAGCTAGCTACACACAACCTCAAACAGCTGACCCTCCATCAAAGCTTGGTTTAATCTTGGGATTGACCGTTGGTTTGGTTTGTCTTATTGCCCTGGTTGCTGCCTTTGCAGTTTTTATCACAAAAAGGCGAAATAAGCCGCGGAATTTCCACTATTCGTTTCAACAAAGAGCGGCCATGAATCGAAAAGACAGCGAAGAATCCATCATGCAGAGAGACAGGTCTGTAAAGGACATCTCTCGCTCAGAGAAGCAGTACCTAAATATAGCGTACGACGAGAACTGTGATGTGTCGGACGACGAAGGACAACAGTTTATGGTTCAGGTTGATCTTGGGAAACCACGAAGCAAGAAACCAGCCACGGTATGCAATGAACCATATTACTACGAAAAGATCACAATGATAGAAGCTGAGGAAACACTGTCGTCGATGGTGAAACCAGGAACCTTCCTTGTACGACAAGGAGCTACCAGCAAAGAGTTCATACTGACGGTGCGTGCGCCAGAGGGGGGGCCGTCATTCAGACACCTGCCTTTCAGATGTGACAAGGAGAGCGATGGCGTTCTTGTAGCTCAGTTTGGCTCCATGGAAGACAGCATGAATTTCAAATCAATGAGTGAGCTTGTTAGCCATTTTCAAGTCACGCCAATCAAGTTTGAAGAGGACTCGCCTGATGTAGTTTTGACGCATCCTTGGAACAAGAGCGAAGTGTGA

Transcript

OS493_013426-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00017	SH2	SH2 domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_013426-T1 global RNA-seq network