Gene detail

Detailed information of OS493_012305-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_012305-T1	BETA-MANNOSIDASE	scaffold_32	792207	823841	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_012305-T1

ATGGCGATTGAAAAGCAGATTTTCTCCTTTATTCTAGCCATTACGTTCTCTTATTTTAATCTGATACGTTGTGAAGTTACAGAAGTTAATCTGGGAGGCACCTGGATCGTTACAAATGCAAATAAAAGCATTTCTGTGCATGGAAATGTTCCCGGAAATGTCCACACAGCTCTGTACGAGAATGGGACTATTATGGACCCTTACTTCCGGTTTAATGATGTCAAATATCGGTGGATAGCTTATGACAACTGGACATACACACGGTCTTTAGAAGTTCCTGAAGATGTCACATCAAAAAGACAGATTCTCCTGGTATTCGAAGGGCTGGATACAATTGCTGCAATTCTGGTGAACAGTATCAAAGTTGGCGAGTCGACAAACATGTTCCACAGGTATATCTTCAATGTTAAGGGTGCTCTCAAGACTGGTTTGAACAGTGTACAGTCCCAGTGCAGCGTGGCGAGTGTCATAGCAACTTCATCAGAAAAAGAGCAATGTTCATTCAGTTGGGATTGGGGACCTGCCTTTGTTCCTCAAGGGATTTGGCGGAATGTCTCTCTGCAAGCTTATGATTCAGCTGTTATAAGGGACATCACAATAACACCCACTAAAGGATCTATTAATATTACGTGGCAGTTATCAGTGACAGCTTTCATAGATGCGGCTGAAGATGGCGTGACTGGGACCCTACTTCTCAGCCTTCCTCAGATGTCTCGCTCACAGAAACTTCCCATTAAATTGCGGCAAGGCCTACAGAAAGTTTCTCTGCCGGTCATGTCTTTTACTGGGAAAGATGATGTAAAACTTTGGTGGCCTCGAGGATATGGAAAGCCTTATCTATACACTGTCAAGGTGGTCTTTGTGAGCCCCTCAGGTCAAGAACAATCAAGCATTAGTCGTAACATGGGTTTCAGGAAAGTCAATCTTGTACAGGAACCAATAAAGGGTGCTCCAGGTCTGGGATTTCACTTTGAGGTGAATGATTTACCAATATTTCTTAAAGGGGCCAATTGGATTCCAGCAGATGCCTTTGAGGACCGTGTAACAAGCTCAGTTCTTAGGAATCTTCTCCAGTCCGCTGTGGATGCGAACATGAATGTCGTGAGGAACTGGGGAGGAGGAATCTATCAACATGACGAGTTCTACAATATAGCGGATGAATTAGGGTTACTTGTATGGGAGGAATTTATGTTCGCTTGCGCCATGTACCCAACAGATGAAGAATTCTTGAACTCGGTCAAAGAAGAAGTACGATATCAGGTGTCCGGACGTCTTCATCATCACCCGTCAATCATATTGTGGAGTGGCAACAATGAAAACGAAGCAGCGCTGGCTGAAAACTGGTACAACACGAGTTCCATGTTTAATAGGTACGCCAACGATTATGTCAAACTCTACATAGACACTATACGAAAGACCCTGGAGGAAGAAGATAAAAGTCGACCTTTCCTCTCCTCATCACCTTCGAATGGAGTAGATACGGAGAGGGAGGGGTGGGTAGCCAAAAAACCAGGAAGCCCCTACTGGGGAGATGTGCACTTCTACAACTATACGATGGATTGTTGGAATAGGACTGGACCTTACAACAGCGCGTTCATGGATCATCGGCAACATCACGGAGACGGTAATGAGCAAATGTTGGATCAAACCAAGAAACACTTTAAACTGTCCAACTCATCGGATTCTTTAAAGAAATTCAAGGACACTCTCTTTATTATCCAGGTGACTCAAGCTCAATGCATGAAGACAGAAACTGAACATTACAGACGTTTACAGAGTGAATTAGTACAGGGTCAAGGAAGAACCATGGGTACAATCTACTGGCAGTTGAACAGTATCTGGCAGGCTCCGACGTGGTCCTCGTTAGAATATGGAGGCCAATGGAAGATGCTTCATTATTTTGTGAAGGATTTCTTTGCTCCAGTGATAGCGTCATCGTACCAGGAGGGCGGCAAGTTTAAACTTTACGTGGTGTCTGATCTTATGAAGCCAATCACAGAAGGTGCAGTGTCCCTTAAGGCGTGGTCATGGTCTTCATTCACACCGCTCTACAGCAGAAACATCGCATTTGACATTGATTCGACAGTCCTCGGTGAGTGGAAACTCGTATACGCAGAGGATTTACAAGCTCTTGTACAAACAAGCAGATGTGAAAGTGCTCGACATTGTGTGTTTACTATGAAACCTTTGGACCAGAGCAGTGGAAAAGACCTGGGACCGACAAACGTGTTCTATCCTTCCAGCTTATCAGAAGCAGTGGGTTGA

Transcript

OS493_012305-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00703	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan
PF02836	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006102	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan
IPR006103	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036156	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR050887	Family	Beta-mannosidase glycosyl hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43730	BETA-MANNOSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004567	Molecular Function	beta-mannosidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006516	Biological Process	glycoprotein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_012305-T1 global RNA-seq network