Gene detail

Detailed information of OS493_011858-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_011858-T1	DNA2/NAM7 HELICASE FAMILY	scaffold_30	2495984	2507409	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_011858-T1

ATGGAAATTGTCAGCAGATTCCCGAATGCATGTCCACAATTACCATTAGTCAAGCTGCATAGTGCTACAATGAGTGTCGTAAATTCTGGAAAACTCTTGGATAAAGGTATAATTTCCACTGTACAAGAGCTAATGAGGTTGAGAAAGAAAAAGGAAATCACACCAACTGCACAGAAGACAGAACGAAGGAGCCCACCTGCCAGAGCTGCCATTACTGATGACAATAGCAAACCGCCCGAGAATTTTCGCGAGCTGAGCATCATTCCGACGCGTGAGGACATTATTGCACACCAAGACCAGGACCAAGAGCGCTTTCTCAGAAAGAACAAAATCCAAGGGCACTATAACAACGAGGAACATTATTTGGATGTCCAGTTCCGGCTCCTTCGCGAAGACTTCTTAAGGCCCCTACGTGATGGAATCCAACAGTTAATGGCCATAGACACTGACAGTAATGATCGCTTACAGGATGTCAGAGTCTACGAAAATGTGAGGATACTGAATCCAGTATGTACCTCCAACGGAGTGGCATACAAGATCAGGTTTGACATCACAAGTTTCCGTCGAGTGCAATGGGAGAACAGTAAAAGGCTCATATTCGGATCACTACTGTGTCTAACGAAGGACAATTTCAAGACCTTTGCTTTTGCCACCGTTGCCACTAGAGAGCTCAAGGATATAAGAAAGGGCCAAATTGAAGTACGTTTTGTGTCGCCTGCCAGTGATGCTGGACTGCGGACGGGGGAGTTGTGTCAAATGGTTGAGTCCATAGCTTTCTTTGAGGCGTATCGTCCAGTGCTTGAAGGACTGAAAATGATGCCTCCTGGAGAATTTCCTCTTCAGAGATATATTGTGAAGTGTCAGAACAATGTCCAGCCACCATCCTATCTGACGAAACCTGATGGCCAGCAAGTGGTGTTTGATTTCTCTGTCATCATGCCGAACGAAGAATCTCATGATCACACTTCGAGTTCTGCTTGTCTCCAAGAAAGAAATAATCATTGCGGATCTAAAGTCTCTGGATCTATGGTGTCAGTTTTGAACCCAGCCTCCTGGCCGTCTGCAAAGGATCTGGAACTAGATGAGTCACAGTTCAACGCTTTACAGTTGGCGCTGACCAAAGAGTTTGCAGTCATTCAGGGACCACCGGGCACTGGAAAGACATACATTGGATTAAGCGAGGCAAAGATCGCCCAGATTCTGTTGCATAACAAATGTGCTTGGAACAAGACGGGAAGTCCCATCCTTGTGGTTTGCTACACCAACCACGCTCTGGACCAGTTTCTGGAAGGAATCCACGCATTTTATCCAGAAGGAGTTGTTCGTGTTGGGGGACGGAGTAAGAGCGAGATCATACAAGAATGCAGCCTCTCGAAATTGAAAAAAGACATGATTGAGCAACGCCTGACGCCTGCACATATCAGACAAGCCTTTGGCGAGATCCGACAAGAAATGAAGAATTTGTCGGAAATGATTGAATGTCACGACGGAATGCTGGAGGAACTGACAAGAAATGTACACCTGTTTCACGAGGATGAGCTTGTTGATTACAGCATGACGCGAAAGCACTATGATTCACTAACAAGGGGTTCCTCTGGTGCAGCGAGGGAAAGAGCGTCCGTCATCCCACAGTGGCTTGGTCTTCCTGTACAGTCAACAGACCCTTATCAAGACGGTTTCTCCCAGCCTCTTGTCATGTTTCCTTTCAATGCTGAATGCGGAGGCCTGGAGTATTTTTCACAAGCAGAGTTAGCTTTCATATCACCACGTGTCCAACACGCCCCAGGTGTCGATGGGACCCCAGGAGGCTCACTGGAACTTGCTGGGACGTTTGACTCATTTATCGAGATTCCAAACTTCTTTGGTGGCTTTGCGGACGCCGGAAGATCCATTACGTTACTCGCATTTATTTTCCCCACTGGAATTGGTGGACCAATCGTTAGCTATGACATTCACGGCTGTGGTGTTCAGCTCTGGCACGATGGGTGCTACGGTGAAATGGGAATGCTAACAGCTTGTTTCATCCGGAGAGATCTCATGGGATACGCTCCCGCTTTGAGAGCCCCGGTGTTGAATATGAATGAGTGGAACTTCATCGGGGCCTCTTACGATCACAGCTCCGGAATGGCACGTCTGTGGCACAATGGAAATCAAGTGGAAGCTGTATCTATAGGGGAGAACTTTGACCTGGCGACACAGTTCTCGATCAGGATTGGTGCTGTGGCAAGCCCTTGGCTAGTGTATTACTTTGCAGGAAGAATATCTCATTTGCACATATATGCAGAAGCACTGACAGTTGACAACATTCGAGCTGTTGGAAACATTCCACAACAAGGAAGAGACAAACTCAGCGAGGAACTCCTATATGTGGAAAGTGACGAAGACGCAGACGAAAACAGCGAAACAGATGAAGGAGAAGATGATAACAAAGGAAACTCTCTTGATTTTAAATTCGATGCTGACGTCATGCAGGATCAAAGGATTCTCGACACGGATGACGTCATCAGGTTTGGTTCCAGACCTCCATTGGATTATTTGAGCACGGACGATCCGTATGCGACTCCGAGGTGTGCAGAAGAAGGTATTCAAAGCGGCGACTGGCAATTTCAGAATCCCAACCGAATAAAGCAAAAGATCAAACGAATTATTCGGAGAGAACTTAACCGAGAAGACGTGATGAGTGAAGAAGAAGCTACCAAGATACATGATGTGTGGAATTTGCCAGAGAAAGACCGCTGGCGTCTTTACCGAAGATGGGTTTGTGATGCACGTAAGAGTTGTGACGAAGCTATCGCTGATTTCCAAGATATGTTTGATGATAAAGTAGATGAGCTGAAAGAAGTGAGGAGACAAGAAGAATACGAGATCCTTAAAAACGCAAATGTGATTGGAATGACTACCACAGGTGCTGCACGGTATCACAGCCTGTTACAAGACATACAGCCGGCGATTACAATTGTGGAGGAAGCCGCTGAAGTGCTCGAGGCGCACATTGTAACCTCTCTAACTCCCGGATGTCAGCACTTGATTCTGATTGGTGATCATCAACAGCTCCGCCCCAATCCCACAGTCTACGATCTCCAGATAAACTACAATCTGGACGTGTCGTTATTCGAGAGAATGGTGACGAACGGAATGCTGTTTTCGAGGTTGTCTTTACAGCACCGAATGCGACCTGAAATCGCCAAGATGTTGGACCACATATACGTCACACCAAAACTGAAAAACCACGAGACTGTGTTGAATTTTGAAAACATAAAAGGCGTGGAACAAGATTTGTTCTTTGTGGACCACGATGAAAAAGAGGACTTTGTTTCAGAAGGGAAAAGCAGGTCGAATGTTCACGAAGCAGAATTCCTGACAGCCCTGTGCCGCTACTTCATCCAACAGGGATACCAGCGAGAACAGATTACAATCCTGACAGCCTACAGTGGACAGCTCCTTAAACTCAGACGAGAGATGTTCGCGGACAAAAAGTTTTTTGAAGGAGTACACGTTACGGCGGTGGACAGCTTTCAAGGCGAAGAAAATGATATCATTCTTCTATCGCTTGTTCGCAGTGAACGGATTGGCTTTCTCAAGATCTCAAACAGAGTTTGTGTCGCGTTATCACGAGCTCGGAAAGGCTTCTACATCATTGGAAATGCTACGCTTTTAGCTGGAGAAGACCCTCATCTCTGGGAAAAAGTCATCGCAGATATGCGCGAACAAAACAATCTGGGACCCCAATTGAAACTGGTGTGTCAGAATCACCCCCAAAACGTGATTCACGCATCATGTGCTGAGGACTTTGAAACGCCCCAGAGGGAGGTTGTACAGAACCATGCGAGATGGAGCTGGAATGTGGTCATGTGTGTGACCAGGTGTGTCACCCGGCAGATCTCGAGCATAAAGAGAGATTCGCTTGCCAGCAGCCTTGCACCAAACGTATCTGTGATCTTGAGCATAACTGTCCCAGGACCTGCAGCGAAGAGTGTGGTCCGTGCATGGTGA

Transcript

OS493_011858-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_011858-T1 global RNA-seq network