Detailed information of OS493_010985-T1 in Lophelia pertusa

Genomic Location: scaffold_27:2560501...2606367
NR annotation: KAJ7380269.1, cytoplasmic dynein with WD40 domain [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q16959Dynein intermediate chain 2, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Q32KS2Dynein axonemal intermediate chain 1 OS=Bos taurus OX=9913 GN=DNAI1 PE=2 SV=1
Q8C0M8Dynein axonemal intermediate chain 1 OS=Mus musculus OX=10090 GN=Dnai1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00225KinesinKinesin motor domainDomainInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001752DomainKinesin motor domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR027640FamilyKinesin-like proteinInterproscan
IPR036961Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47971KINESIN-RELATED PROTEIN 6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003777Molecular Functionmicrotubule motor activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0007019Biological Processmicrotubule depolymerizationInterproscan

Expression pattern
 Expression trend for OS493_010985-T1 global co-expression network
TOP