Gene detail

Detailed information of OS493_010970-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_010970-T1	UBIQUITIN THIOESTERASE	scaffold_27	2401404	2405855	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_010970-T1

ATGGACGACACTCTGAGTCAATTCATTGAAAAAACTGGGACAGATCCGAGCCTAGCAAGGGACCTACTCGAAAGTACAAAATGGAACGTGGACGAAGCGCTGCGAGCTTTTGAAACACTTTCTTTGGGCTCCGCTGCGAGGCACAACGAAGAATTAGGCGCTGTTAATAACACAGTTACGAGTGGAAAAGCCAAAAGAGGACTTTCAATGGTCAATGCAGACATTGTTGGAGAAGCTAGGCATAAAGTTATTGAAGACAAGGTACCAGGCACCGATGAAAGATATGAAAGATTTGAGGAAATGTCCGACTTCACTTTCGTTTTGCCAGATTTATCCAACTTCTCTGAGGAATTGAGTGAGTTTCTTCGGAGGGACTTAATTGAAACCTCAGCTTTAGTCGCCCTGGAGCAAGCAGGACGGTTAAACTGGTGGGCTGATGTAGGTGTTTGCCAACGTCTTCTTCCCCTCGCAACTGTGGGAGATGGTAACTGTTTATTACATGCTGCCTCTCTTGGAATGTGGGGATTCCATGATCGCTTATTGACGCTGCGCAAGGCATTGTATTGTACTCTCACAAGTCACTTGGCCAAAGGAGCTATCAAAAGACGATGGAGATTGCAACAGTGGGAGAGGAATATAAAAGCTGGTGGACTGTTGTACTCGGAACAAGAGTGGGAGAGTGAATGGCAAGAGGTGTTACGCATAGCTTCTACACAGCGTAGATTAGATCATCAACAAAGGGCTGCAGAAAGCAAGAAAGGAGGAGAAACAGTTGCAACTCTGGCCACTATAGCTGAGAAGGAGGCTGATGACGCATCTGAGGACTCCGCTGGTAAAGTTAACCAATCAGAAACAGAACAGGAAGTTGAAGTGAAAGAAGATGGTGAACGTCCAAGTGAGCACACTTCTGCACAGGCCGAGGGAGGGGCTTTTGAAAGCCTTGAAGACATTCATGTGTTTGTTCTAGCACATGTTCTGAGACGTCCAATCCTAATCATAGCTGACCAGTTTTTGTATGGATTTGGAGGTGAACCGATTGCACCCATTCCGTTTGGAGGGGTGTATCTTCCACTAGAATGTGACCCAAGCATTTGCCTTAAGAGTCCCTTGGTGCTTGCTTTTGATTCAGCACACTTTTCTCCTCTGGTTGCTTCTGATGAAAAGAACGATACAAAGAATAATTCTCTGAAAGCTTCTGTGCCTCTAGTTGGACCAGACTATGATTTGTTGCCACTCCAATTCTCAGTTGATCCAGGGGAGGAGTTTCTGTGGAGTGGCCTAGATGGCGATTCTAGCATTGCAGAGAATTTGGCATTAAACATGGATAAAAAGCTGGAGCTTTTGAAGAAATATTTAAACATGGATTTGATCAAAATACCAAGCGCAAGCAAGAAAGATACTGAAGATAGCAAGCCAGCTGTGAAAGGCGAGAGATCATCTGAATCAAGTAGCAGTGATAGCTCAAGCAAGCCTGAGAAGAAATCACCATCAAAATCTGTTGAAAAGAAAGAGAATAAGTCTTGGATCGCTACACAGATTATGAAAGTGGGTGCAATGGCTGGTGTGGTGGGAGGTGTTATCCACAGAGACATTTATGTTGCAAAACTGCAAATTGACAAGAAACCAGTGTACTACGACAAAATGATAGAAAACTATATTGAGTCAGCCAAACTCCGATTTGAAGAAGAAAAGAAGTCTCAAGTGAAAGCTGCTAAGAGTACAGGAAACACTGGGGAGAAACCTCAGCCATGTATCAACCCTGGCTGTCATCTGTATGGAACATCAGCTACAAATTACCTTTGTTCCGGTTGTTTCAAGACTCAGAAATCATACAGCGAAACGGGTCGCTACGATGGCTCAGCATCGACCAGTGGCAAGTCGTCTGTGTCAAATTATGATAGCAGCGGATTACCAAGCTACTTGCCACCTCCTGCATACTCTGCCTATGTTCCTTACGGGTATTTTGGGGATCGCTCTAGAACACAAGGTTCAACTGTAGAACAAAGGACATCTGCGCACTCAAGTAAAGCGGCTGAAGGGGGGCTGCCGTCATATGACGAGGTAATGAAAGGTACTAAAAATACAGCTTCTGGTATGCCTTCTAGTTCAGCAGCCAAGCTTGATTCAACTGGTGAAAGTCAAATGGAGGGTTACCGCACCACAGGTCAATCTGTGGTTCAGTGTGTTTCCAGTGACTGCACGTTTTATGGCAGTCCAGGAAACAAGGGATATTGTTCTGCTTGCTACAAAAGATATCAAAAGTCCTTGAAGTATGTGGTAGAAGAACACGAAAAAAAATCAAAAGTAGTCTGA

Transcript

OS493_010970-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU
Ubiquitin Family	UBD\|ZnF\|ZnF_A20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01754	zf-A20	A20-like zinc finger	Family	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002653	Domain	Zinc finger, A20-type	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR051346	Family	OTU Domain-Containing Deubiquitinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0070536	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0071947	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_010970-T1 global RNA-seq network