Detailed information of OS493_010494-T1 in Lophelia pertusa

Genomic Location: scaffold_25:2468191...2472012
NR annotation: KAJ7392834.1, BRCA1 BRCA2-containing complex, subunit 3 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4VA72Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis OX=8364 GN=brcc3 PE=2 SV=1
B5X8M4Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar OX=8030 GN=brcc3 PE=2 SV=1
A0A8M3B525Lys-63-specific deubiquitinase OS=Danio rerio OX=7955 GN=brcc3 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Jab_MPN

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18110BRCC36_CBRCC36 C-terminal helical domainDomainInterproscan
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050242FamilyJAMM/MPN+ metalloenzymes, peptidase M67AInterproscan
IPR033860FamilyBrcc36 isopeptidaseInterproscan
IPR040749DomainBRCC36, C-terminal helical domainInterproscan
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR037518DomainMPN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan
GO:0070552Cellular ComponentBRISC complexInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0070536Biological Processprotein K63-linked deubiquitinationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11864BRCC3, BRCC36; BRCA1/BRCA2-containing complex subunit 3EC:3.4.19.-
DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_010494-T1 global co-expression network
TOP