Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
Genomic Location: scaffold_24:913425...933880
NR annotation: KAJ7337083.1, cleavage and polyadenylation specificity factor subunit 2 [Desmophyllum pertusum]
| CDS | |
| OS493_009935-T1 | |
| Transcript |
| OS493_009935-T1 |
| Protein |
| OS493_009935-T1 |
| Uniprot term | Description |
|---|---|
| Q10568 | Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1 |
| Q9P2I0 | Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2 |
| O35218 | Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07521 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF10996 | Beta-Casp | Beta-Casp domain | Domain | Interproscan |
| PF16661 | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011108 | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| IPR035639 | Domain | CPSF2, metallo-hydrolase domain | Interproscan |
| IPR022712 | Domain | Beta-Casp domain | Interproscan |
| IPR036866 | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR001279 | Domain | Metallo-beta-lactamase | Interproscan |
| IPR027075 | Family | Cleavage and polyadenylation specificity factor subunit 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45922 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005847 | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0006398 | Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | Interproscan |
| GO:0098789 | Biological Process | obsolete pre-mRNA cleavage required for polyadenylation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14402 | CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
| Expression trend for OS493_009935-T1 global co-expression network |