Gene detail

Detailed information of OS493_009693-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009693-T1	F-BOX ONLY PROTEIN 6-LIKE PROTEIN	scaffold_23	1702570	1719705	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009693-T1

ATGCCAGGGTCTTTTCCCGACCCGCAAAATTTAGAAGGGAAAAGCCCTGGGAACGAGGTTGTGCAGTGGAATGTGAGTGACGCCAAGAACATTTCAAGTTACCTCTGTGAAATACATTCAATCGAGGCAAATACAGTCGTGTTTTCAAAGGAGGTCGCCGGGTCGGTAGGCGACAGCTTGGAGTCCAGTCTTAAAATTGACCTCAACGAAATATCTGACAAGACAAAGTCTCCCTATCGTATTCATGTATGTTCCCTCGGAGTGTCAGCAACATTGGCCAGTGTGTTTGTCACCAGCAACGGCAACCTGTCCTTCTTGCCTCAGGTTGATGGCATCTCACGATCGTACGACCCTCAGAGCAATCAACTGACCGTTTCCTGGCTCCCTGTTAATGGAGCACCCAAATACAACGTTAGCATTAGAGAAAAAACAAGCATTTCAAGCGTCGTAAGCATCCTAACCTCGGATGGCGAGAAAACAAAGGTGGTGTTTGAAATGGGAAACGTTCCTCTACACAGTGGTGTGAAGTACGTTGTCACAGTGGTCGCTGAAGGTTCGGACGCGCTCCATCTTCCAACTTTGCCGTCTACATCAGACACGGAGTTTGCCCAATTACCAAAACCAGCCTCTGTTAGTCAAGAATACTCCTTTGAAGAGAAAAAGATCAAAGTTACTTTCCAGCCCGTTTCTGATGCATCCGCGCACTTGATTGAAGTTTTCAACGTAATCACACCTATCAAAATAGCAGGCAAACAGGTTGTTCCAAAGGCAACTGGTGTCGACTGGCCCGCAACTGAAGTCTGCTCGTTTGACGTCTATGACATGACATTTCATGGTGGTGCTCAGTTCAAGACACGAGTTATTGCCCAAGGTAATGCAAACTGGATTGACAGTTCACCTGGAATAAGCTCTACCACGTTAACATGCAGCGATGCAGCTATCAGTGTTGCCTTGTACAACACCCCGACTGACGACTTGATGATCGTCGTCTCTTCAAGACCTGGACACTTCACTGCAAAACTACAGGACATTGTTGACAATAGAGCAATGACACAAACATTTTGTGTTAAACGGGACACTGTAGATGACTCCGTTCACCAAACTTTGTTGGAGTTTCCTATAAACCCAGACGAAGAGCCGCGAGGTGCAATATATCAAGCTTTCGTTCTGAACACCGGTGATCAACAGTACTTGCCAAGCGAGGTTAAAGAATCAGACGAAGTGCCATTGCTAGATCCACCAGCTTCTGTGTCACAAGAATATAAAGACGGTGTCTTCACTGTAGTCTGGAAATGCGTTCAATCGGCAACCGGTTATTACATCAGAGTTTACAACACTAAAACTGGAAGCACAGCTTCAGAGGTGAGCGTTACTAGTGATGTGCGTCCCGCTGGAGAACAGATGAAGAAAGAGTTTGATGTAGATTCACTTCTACTGGAATCTGACGGACTTTACCAAACATCGGTGATGGTCTTGGGAGATGAAGTCAGTATTGGAGGAGCTAGCACCAAATCCAACACGACAATAACGTCTTTTCCCTCGCCAGAAGACGTCAAAATTACCTTTAACAACGAAACGCGTCATATGCTTGTACGCTGCTCTTCTGTAAAAGGCGCTGTTTCTATCAAACTTGGAGTGGTCGATGCTGATGAACTGAAAAACGATGAAACGAATATCCAAGGTGCGTTATTGAGATCCCAAAAAGTGACCATTACTTCCGGTGACGACAGTAAATCTGTAGAAGCAGAATTTGGTGGCAGAGTGCTCCTGCTCCACAAGTCCCACGACGGTCTATACAGAGGTGTGGCACAGGTGATGGAAAAACACGGTGAAGTTTCTCTTCCAAGTGGATTTTCCATTTCTGATGACGTGGTAGCTTGGTTGAAGCCGCCTGTACCGATTCAGATGCATAACATTGCTCCTGCCAAGTCATACTTGATGATAAACTGGACTCCCGTTAACCTGGCGGTTCGGTATTTGGTACAAATCTTGCAAAAGAGAGAAGATAAGAATGGAACTACTACACTGATCCCATTTTCAAACGAGGCGCCCGGTAACGTTTATTGTTTTGGTGTCAACATGGCGAACGTAAACGTTGATGAAAGTGACAAGTTTGTCGCCAAAGTTCAATCGATTGGAAATCCAGGAACTGTGATTACAATTCATTCCACTGGTTATTCTAGCGAGACCCTGGTTTGCGATAACTCGCCAACCGACATTGACGTTTTACAAGTAGAAGACGAAACAGTAAAAGTGACCTGGAAAGGAGATTCAGCCACCACTTTCCAATTCAGTGTTTGGAGAATGTCACAGTCAGGAGATCATGAAGACGTCTTTAGCAAGGAAACAGATAAGTTCCAATTGATATCGACATCAAGAGCTCTGCGCATGATTTCACCGGGCCGGTACAGATTTGGCGTTCGAGCTCAAGGATCTACTAACAAGTTACACAGTGTTTACACACACTCTGATGTCTTGGCTGTCATCATGGATGCTCCAACTGTCACTATCATGAAGATGCGCCCTGAAGTAACGGTGGAGTGGACTCCAGTTGACAACAATCCAACTCAGAACTTCTCAAACTACGTCATCCATTATCGGCTTCAGCGAGGTACAGAGTCAGAGTGGAATCAGGTGCAAGTTGAAATATCGGCGAAGGAGAAAATGATCGTAGATTTGCAACCCGACAGCGACTATCTCTTCTGCATCTCCGTTGCGAGTCCTAAGCGAGGGAACGGCATTAGAAGCCAAGCCACAGCTGTCCACACAAAATTTGGCACTGCTGACTTGCCGGATCCTGATGGGAATAACCGCTGGTGTGTTTCAGCCGATTATTTTGAAGGGAAGTCTGAATATTGTTGTAGGGCTCAAATGATCGATCTTCTCGCCAGAGGCTTTACACCTGAATATCTAGATGAGATGAAGCCAGACATTGAGGTTTACGAATGGTTTGCCATCCAAGCAGGTGGCTCGGGTACTTTTATCATGAACGTGTCTCTTCTTGACAGCAACAAGAACGATCTTCCAGGGGAGAACTCCCGCTATCGATCCAGTAGTACTGAGGTCCCTGTACTGAATAATGGATCATGGGCACGTCTGGGGCACACTTTTTCCAATTATCCTTCGGGTTTAAGGTTCATACAATTTGAAGAAGCTGTGCAGAGCCGTGGATTGCACGACGCTTATAACGTGAAGGCTTTTCGACCTACCGTGAAGATTTCTAAAACCAAGAAGATTTCTAAAAAGAGCATGCCTGATTGTCTTGATAAAGGATTCTGTGGAGAAACCGTTCAGATTTCTAAAGAGAAGACGATTTCTAAAAAGAGTATGCATGATTGTTTTGATAAAGGCTTCTGTGGTTTGTAG

Transcript

OS493_009693-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF04300	FBA	F-box associated region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007397	Domain	F-box associated (FBA) domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR039752	Family	F-box only protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12125	F-BOX ONLY PROTEIN 6-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006516	Biological Process	glycoprotein catabolic process	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009693-T1 global RNA-seq network