Gene detail

Detailed information of OS493_009561-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009561-T1	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	scaffold_23	219361	231522	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009561-T1

ATGGATGAAAAGAGTATCTTAGAAGTTGCATTTGAATGGCTGTGTGAATGTGGGGCATTTGACCAGCTCAGAAAGCAATGTGAATGTTACACAACGGATCTTGCGGAAAAGACTGTTTACAGATTTGTTCTTGAAATGGACCTGATGCATTTGCTTGATTTTAATGCTACACTCGGAAATTTGGTCATAACTGAGCCTTTGAATGCCATTAACGTGATACAAGAGGTCTGTTATGTTATCATTCACACCCTGTCATGGATTCCAGATTTGTTGTTCCCATCACAAGTTCTTGCTGTTGTCAGGTTTTCTTCTGTTTCACCACATCAAGAGTGTGTAAGCAGTAAGAACCTATCTGGACATGGTCAGCCAAATCTTGTAAAGATTGTTGGCATCGTAAGTGGAATCACAGCTGTCACTCAATACACACAAAGTGCAAGATTCTATTGTCCTCAATCCCAGTGCTTTGGTTCTGCTAAATATTGTTATATCAGAGTTCATTTGGCTGGTAAAACGGAGGATGTTACTGTAAGAAGTGACTTTGTGTGTAGATATTGTGGACGCCCTCTAATTGAAGATGTCACTTGCCGTACTTTAGCAGATAAGTGTATCGTTCAAGTAATATCTCCATTGACAGTAGACAAGAAGTTATGGATGAACACTACTGATAATGGGAAATTCTTCCAAGCTATTCCTATCTATGTCCGAGATGAGCTCATCAAGGAAGTTCAGATTGGCTGTTACTTTTCATTTGTTGTTTTACCTTCCTGTGAAATTCACGATTCTTCTTTGCATTTTCAATGTACTCCAGTGTTTGAGGCAAATAACATAGAGAAGATTAGTCCTAGTCCATTTTTAAGTCTACTACCAGCCAATATACCAGAGAGAATAGAGATGCTACATAAAGACAGGGAGGATTCACCTTGGAGTTTTGTTGCCAGTCTAGCTTACTGCTTCGGAGGCTGTGTGACACCTCCTGGCACATTCTTTCAACTGAAAATGTTCATGCTGATGTGCTTGCTGCTGCTTCATTCGTCTGATTCCTCTGAAGATGCTAAACAAATTCATTCCAAGAATCTTCACTTGCTTGTTATTGCCGATGACCTTCTCAGGATTCAACGACTCTTGTTGTATGGAGCTTCGTTTGCAAAGAGAATGCTTGTTTACTCGCCTATCAGTGAACTGTTTCCATCTTGTTCTCGGGATCCGTTTGGCTCTGGTACTTGCATGGTCAGTGCTGGATGCATTTCGTTGGCAACCGATGGTATTTGTGTGATTCCCAATGCGACTGTCTTAAAGAAGGACCAAAAGGACAAACTTCAAAATGCTTTAGAGAATGGGTCCATAACGATGAAGGTTCCAGAGAAGTATTGGGCTTACCAAGGGCACCAGCTGTCCCTACCACTGACCTGTAGTCTGTGGGCGTGTTCTGAACCAGTACAGAAAACCAGTCACCAAGCAGTGCTTGATCCTATGGTAAACCTAAGTAACACGATAAAGGACTGTCCAACATTGCCAAGAGCCTTTATAGACCAGTTTTCACTAGTGTTTAACTTGAGTGGATCAGCTGAGCATGTTGACAACTCTGATGAGTCAGTGAGTGAGGAGGTGTTAAGGAAAGCGATGGAGTGCCCACAAGACGAAGCATCGTTATACATTAGTGACGAGGAAATGAGCCAGTTTCTTCACTATGCTGGACATCAACATGTTAGCCTGACAGTGGCAGCACAAGATCTTATTCAAGGTTATTATCTGGCCAGCAGACGAACCAGAAACTCTCAGTCAACTGGTGGCACAGACTTTCCTGCCTCTGCACTACAAACTCTGACCAGTCTGGCTATCGCTCATGCCAAGCTAGCTCTTCGTTCAGAGTGGCTGGCCAAACCGAATCGCACCATTTTTGTTGCTCAGTATGGAGACAAGCTCGTGGGGCTGAGGGCTATTCACATCGTAGACGAAGGCAAAACGTTTATAAGTCAAGGCTTGCGAATTCACCCAAGATTCCGAGGATTGGGGTTGAGCACTCGGTTAATCGACGCCATTCATGAGTTCATACGACTTGAATATCCCGACGTCTGCCGAGAACGCTTCACTACTAAATCCGACAACATCGAACGACTTGCTATCCAGAAGAAATACGGGGACACCGCCTTGTTTGACCGAGATATTTTGGCCTTTTACGTGAACAGGGAAACTTTAAAACCACAGCAGCTAGAAGAGGTGGCAGGAAATTTGATTTAA

Transcript

OS493_009561-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493	MCM	MCM P-loop domain	Domain	Interproscan
PF00583	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182	Domain	GNAT domain	Interproscan
IPR001208	Domain	MCM domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR016181	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009561-T1 global RNA-seq network