Gene detail

Detailed information of OS493_008692-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_008692-T1	DYNEIN HEAVY CHAIN	scaffold_20	3085591	3097295	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_008692-T1

ATGGTCCTCTGTGGTCCCCCTGGTAGCGGCAAGACCATGACGCTCTTCAGTGCTTTGAGAGCTCTGCCTGACATGGAGGTTGTCGGTCTGAACTTCTCCAGTGCTACATCTCCTGAGCTGCTCCTGAAGACATTTGATCATTACTGTGAGTACAGAAGAACACCTAATGGAATTGTCCTGGCCCCAATACTGCTTGGAAAGTGGATGGTGCTGTTCTGTGATGAGATCAATCTTCCAGACATGGACAGCTATGGTACCCAGCGTGTCATTTCTTTCTTGAGGCAAATTGTTGAGCATGGTGGGTTCTACCGCACCACTGACCAGGCCTGGGTCACCATGGAGAGGATTCAGTTTGTTGGAGCTTGTAATCCTCCCACAGATCCTGGCAGGAAGCCACTGTCACACAGATTCCTGCGTCATGTCCCAGTCATCTATGTTGACTACCCAGGTCCCGCCTCTCTGACACAGATCTACGGAACATTCAATCGTGCAATGTTGAGAATCGTTCCGTCATTGAGGAGCTATGCACAGCCTCTGACCGACGCAATGGTTGAATTCTACTCCATGTCACAGGAACGTTTCACCCAAGACATGCAGCCACATTACATCTACAGTCCGCGTGAAATGACTAGATGGGTGAGAGGGATCTGTGAAGCATTGAAGCCGCTAGAGACTTTGTCAGCTGAAGGACTCGTTCGTCTGTGGGCGCATGAAGCATTACGTCTATTCCAAGACAGGCTGGTTGAAGATGACGAGCGTAAGTGGACAGATGAGAACGTCAACAATGTCAGTTTGAAGCATTTTCCCAACATAGATCGCAATGCTGCCCTGGCACGACCAATCCTCTTCAGTAACTGGCTGTCGAAGGATTATATGCCGGTTGAACAGGAAGAGCTTAGAGACTTTGTGAAAGCCAGACTTAAGGTGTTTTACGAAGAAGAGTTGGATGTGCCACTGGTGTTGTTCAATGAAGTGCTCGAGCATGTTTTGAGAATTGACAGAATCTTTAGACAGCCACAGGGACACTTGCTGTTAATTGGTGTGAGTGGAGCTGGTAAAACCACATTGTCAAGATTTGTGGCGTGGATGAATGGACTGAGTGTCTTCCAAGTCAAGATTCATCGCAAGTACTTGGCTGCAGACTTTGACGAGGATTTACGAGCAGTGCTTAGACGTGCAGGCTGCAAGAATGAGAAGGTTGTCTTCATTTTGGATGAATCCAACATTCTGGAGTCAAGCTTCTTAGAAAGGATGAACACACTGCTGGCAAATGGAGAGGTTCCAGGATTGTTTGAAGGTGATGAATATACCACGCTGATGACTCAGTGTAAGGAAGGTTCTCAAAGAGCAGGTCTTATGCTGGACAGCAGCGAGGAGCTGTATAAATGGTTCACACAACAGGTTATGTACAACTTGCATGTTGTTTTCACTATGAATCCATCATCCGAGGGTCTGAAAAGCCGAGCAGCTACATCTCCAGCCTTGTTTAACAGGTGTGTTCTCAACTGGTTTGGTGATTGGTCCACTGGTGCGCTGTATCAAGTTGGCAAGGAGTTCACCAGCAAGATCGACCTGGAGAAATCCAATTACACCCCACCAGACTACCTGCCCAAAGTGTATGAAGACTTGCCCATGCATCCCAGTCACAGGGAAGCTGTTATCAATGCATTTGTGTATGTTCATCAAACCCTGCACCAGGCTAATGAACGCTTAGCCAAGAAAGGAGGCCGTGTAATGGCGATCACACCTCGTCACTACCTTGACTTCATTAACCACTATGTGAAATTGTTTAACGAGAAGAGATCTGACCTTGAGGAACAACAACTTCACTTGAACGTTGGTTTGCAGAAGATCCGCGAGACTGTGGACCAGGTTGAAGAGCTTCAAAAGAGTTTGTCTCTCAAGAGTCAGGAACTGGAGGCAAAGAATGCTCTGGCCAATCAGAAACTAAAGCAAATGGTTAAAGACCAGCAAGAAGCAGAGAAGAAGAAAGTTGCGTCCATGGAAATTCAATCAACAATTGTGAAACAAACTAAGCAAATAAAAGAGAAGCAAACCAGTGTAATGGCTGAACTGGCCAAAGTAGAACCAGCTGTACAGGATGCTAAGATGCTGTGA

Transcript

OS493_008692-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12775	AAA_7	P-loop containing dynein motor region	Domain	Interproscan
PF12780	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF17857	AAA_lid_1	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR024317	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041589	Domain	Dynein heavy chain 3, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45703	DYNEIN HEAVY CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_008692-T1 global RNA-seq network