Gene detail

Detailed information of OS493_008603-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_008603-T1	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	scaffold_20	1928940	1976928	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_008603-T1

ATGGCGGTACCAGTTGCAGTTGGTGCAGTAGCAATCGCAGTCCTTTATGCCGGTAAAACTTACTTCCAAGGTTCTCGATGCCACAGCACCAAAAGCCTAAAAGGCAAAACTGTTGTTATCACGGGCGCAAATACCGGCATCGGTAAAGAAACCGCAGTGGATTTAGCCACGCGTGGAGCGAGAGTTGTCATCGGTTGCCGAAACCTGGAGAAAGGCAAGGCAGCACTAAAGGAAATACAAGGGCGAAGTGGAAGCACAAACGTCTTCCTCGAGGAGCTAGACCTGGCCTCGTTAGATTCAGTACGCAAGTTCGCAGACAACATCCTGAACAGCGAGCCCCGGCTAGACATCCTGGTCAACAATGCTGGTGTGCTGGCTTGCCCTTATCAGAAGACTGAAGATGGTTTTGAAATGCAGTTTGGAGTTAACCATCTGGGCCATTTTCTCCTAACTATACTACTCCTTGATCTGCTGAAGCGTTCGGCGCCTAGTCGTATTATAAACGTGTCTTCTCTAGCTCATAAGTTTGCATTTGGAGGCATAAACTTTGATGACATCCATTTTGAAAGGAATTACTTCAACTATGGCGCTTATAATCACAGCAAGCTTGCAAATTTGCTCTTTACAAGAGAGTTGAGCAAACGTCTTGAGGGTACCCATGTGACCACCAATGCACTTCACCCAGGGGCGGTCAGTACAGATTTGCAGCGCCATTCTTTTATATCCAATGCACTGGTGTCCCCACTCCGCTGGTATTTCTTAAAGACCGCTGAACAGGGAGCCCAGACCACTATTTACTGTGCAGTCTCTGAAGAGATGGAAGGTGTAAGCGGCAAATATCTGGCAGAGTGTGGCATTGTGGAGCCCACCAAAGCTGCGCAAGATGATGACGCAGCAAGGAAGTTGTGGGATCTTAGCTTGAAGTTGATAATTGCCATGAATTCCGTCTCTGACATCTGGCTTCTAGTAGCTTCAGCCGCTGGAATCGTCCTCGTTTGTAATCTGGTTTATATTAGTCTGGTGAAGAAATACCGCGTCGCAAGACAGCTACTAGCTTCGTTTCCCTCAGCTCCAAGTCACTGGCTTACAGGACACCTCAAGTACGTAAAAAAGCATGATGGCGCTGCTCTTCAGTTCCATGTTCGATGCGCTACTGAATTCAAAACATGTTATATGGTACGGAGGGGTCCTACCATGACAAACCTAGTACTGTGTCATCCAGAGACGATCAAGGTTATTCAGAGTGGCAATGCTCCTAAATCATTTACATACCAACTTCTCAAGCCTTTCTTTGGAGATGGGCTGATTGCTTCAAATGGAGACAAGTGGTTCAGAATGAGAAGACTTCTCACTCCAGCTTTCCATTTTGAGATCCTCAGATCATACGTCAGAATTTTCCAGGATTCTACAAACATTGTCTTAGAGAAGTGGTCCTCACCAGAGAGTGGTCAGGTGGAATTGTTCCATGATGTGAGTTTGATGACGTTGGACTCCATTTTGAAGTGTGCTCTCAGTTACAAAACCAACTGTCAGACTCAAGAAAAAAGGAATCCTTACATTAAAGCAGTTTATGAGGCATCTGAAGAGATCTTAAACCGGCTCATGAACCCATTGTTATTTTCAGATATAATTTACCAACTGACACCAGGAGCAAAAAAATTCACTAAGGACTGTGCTCTTACCCAAGCTAAAGCAAAAGAAGTCATCAAGGAAAGGAGAGCTGCTTTACAAGATAGTGATGAGCAAGAGAAGCTTAGGAAAAAGAAATACTTGGACTTCCTAGATATCCTACTTGCAGCCAGGGATGAAAGTGGAAACGGTTTGTCAGAGGAAGAAATCACATCAGAAGTCATGACATTTATGTTTGCAGGACACGACACCACTGCGAGCTCTATCTCGTGGACATTGTACAATTTGGCAAGGTTTCCAGAACACCAAGAGAAATGCCGAGAAGAAATTAATGAAGTGTTTGGCGACAAAGAAGAGTTTGAATGGAACGATCTTGGTAAACTGAAATATGTTCTGCTATGCATCAAGGAAAGCAACAGACTGTTTCCTCCAGTCCCCAGGTTAGTCGATTGTTGGACAAGCCATGCGAGATTGACGGGACACTTGTGCCTGAAGGGACTTGGGTCACATCTCATATATTGCCTTGCATCGTAA

Transcript

OS493_008603-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128	Family	Cytochrome P450	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43157	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_008603-T1 global RNA-seq network