Gene detail

Detailed information of OS493_007381-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_007381-T1	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	scaffold_16	1704311	1719517	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_007381-T1

ATGGAGATTCTGTGCTTTGCCTGGCTGCTAACAGCGATGGTTGTTTCATTACCCGCTGAGACGAGAGGAAATGAACGTCAAGGACATGGATGCCCTAGTGATGAACTGTCCAAAACCCCCTCTCGATATGCTAAAGAACTCCAAAATCGAGTGTTAAGGAGGATTATATTTGTAAGGCCCAGCGACAGAGATTGGTTCCTCAAACAACGATATTTTCAAAAGAGGCTTCTGCAGTGGGGATTTCAAAAAACGGACAAAGACAAAAATGGCTTGGTAGACTACAAGGAATTTGAAGCTACAACGAAAATATGGCGTCTACTAGTTTCAAGTGGGTGCAAGAGAGCTTTCATTGAAGAGTGTGACGAGAATCAGAGCAAGAGTCTCTCATTGAAGGAATGGCTGAATTGTTTCAATATCACTCCAGCGTGCAATAAAACCTGTGTCCGTGGTCATCTTGACACAGTGCGCTGTCAATGCCAATGTGCTCAGAGTGTTATTCAAGGACGAGTAGTGACGTCATCTGGATCCCCACTTCGAGATGTTGGCATTTTATTAGGTTCCTCTCCATACACGGAAGTAGCAAGGACCAATAAGAGTGGACACTTTTCAATGATTGACAGGTGTGAAAATTCGTCCTATTCGGTGATAAAGAGTGACTTCATTCCACTTCAACTTGAGGGAGGCGTTCAAAGCAATGTCCATCCGCTTTTGATTCATCTTGACGATGCAGAGCCAGCTTACATCACCATTAATCCTAAGAGCAAGATGCGTATTGCTGGGCAAAGTGTGAATTTTACTTGTGAAGCAGATGGGACACCACCGATCAAAATAAGCTGGTATCATAATGGAAGACGTTTACAGCAATTAACCTCTGGAAGCAGATCGAACTTGTTCATACCCAATGTAAATGGAGTTCAAGGCTTCTACACTTGTAAAGCTACAAACGAGTATGGATCAGAGATTTCCACTCCTGCCGAGTTAAAGATAAAGACAGAGGAAATATTAGACACCTGCAACCGAACGCCAAGCAGTGAAATCATAAAACTTCCACTAGGATGTAAGGTAAAAGACACAGGGGAGAACACCCTGGATGTTGGACAATGTTCTGGCGAACCGTGCTCGCAGAGGTTTAAATTTTCTCAAACTTGTGGAGGTAAAGAAGATTGTTGCTGCGGCCCCAGGGTTGACGATTACCAGGAGATAGTCGTGATATGTGGTGCGAGGAAGTACTTTAAAATGGTGTTTTATCGTGTCAAGGAATGCAGATGCAGTACTTGCCTAAAAAGGGAAACTCTATTGAAAGGTGATGTAGTCGGTGGCCCTAATAAAGACCCAGTCAAGAACATCACAGTTATATTCAGGAAGAAAGTAGTCGACAGCACCAACGAAGACGGCAAATTCTCGTTCATTATTCCTGATGACGTAGATCGTCTAACAGTGACTTTCCAAGACCCTACGGACCAATTCTTTGACACCACACAGACCATGGCATTTCAGAGGGGACAGACTGTGTTCCACAGGATAGTACTACAAGAGGAGGACCCGCCAGTGACGTTCGACAGCGGCGAAGATCTGAGTGTACCGCTGGGACACGCACGGGACAACATGGCGGTGCTGGAAATGTCCGCTGATAATCTGCTGCGTAAAGATGGTAGTCCATACAAAGGTAAAGCAAAGATAAGAGTGAGTTTGACGGATCCGAGAAACGCCAGTGATCTGTTCTCTGCCCCAGGCGACTTCACAACAGTTGACCAATCAGGAAGCGTTCAGCCACTGAAAACATACGGGATACTAAGAATAAAAGTTCAGGACCAAGACAATAAGCAACTTGACCTTGCAGGAAATATGAAGATTTATCTCGACGCTAATAAGATTATGTTACCAAGTAATTCTACTGGAGAAATGGCGCCATGGCTGTGGTGGTTGGATGAAAAGACCGGAAGATGGCGTCAAATGGGAGAAATGAGACCCGCGTACAACCCAAGGACCAAACGAGCATCGGGTGGCAGACGGTTTTACATCGGTGACATTCAAACTGATAAGATATCAAACATCAACATCGACATTCTGTGGAAACGCTGTTATGTTCGAGCCCAGGCTTTCACCATGACAGATAAAGGCATGCAACCTGTCAACGGCGTCGTGGCCACATTGATTGGCTGGGAGAATGCCGATCAGGAACAATATTATGGATATACCAAGAGTGTTACGGATAAACACGGAATAGCTTGTATGCCAGCGTGGTGCGATTCTGATGTCTTTTTACAGTCAGGCAAGTTGTCGTTTGATACAAATGGCGGTGAACTTGTCAGTCACCTAAATCCTGACAACACAACCCTGAGCAAGCTGTCGCCTGAATTAGACGCATCTATTATAGCAGGGAATGAATCAAGCTCGTTTAAGTTCACCACGAAAGTAACCTCACAGGCAGGGCCTATATTCGGCGGTGATGAACTGAACAAGTGTCTTGATCCCGATGATAATTTGGTGGCATTTAGATTTTACATGAACAAGCTCCAAATCAAACTAGATGACTTCGGTTCCAAGCCACCTGGCCATCCACTGTCATGGTACACGAAAGATCCCGGCAAACCAAACAAGGAATTCAAGAAATGTTTCCTTAAAATCACGACTGAAAATAACTTCTATTATGGCCCAGCTCCTATGGTATTGGTGCAAAGTTTCACACCCACCGGTAAAACCAGGTACGGATTTTCCATGAAAGAACAAACAACTACAGAAGAACGATCTACTCGAGCTGAGAAGTATTATCGGGACGAATTATCAGTGTCTAACGCTTGTGTTGAATACAGATGCAGCGAAAAGAACAAAGAGACTTTCATTGTTCTTACACTTCTCACTGGCCTTTGTCTGTTTCCGGAAACAATTCCTGGCCTTCGTCCCGAGATTAATCCCTATATAGAGAAATACGGAAATGTTACCAATTTACCTTCTCGCAGAAGTATAAACTTCTACGCCCCGGTTGACATATCCGATGGTAAGTTGGGACTCTATACTGGACCCGGAAAGATCGCAGAAGAGCGTTGCAAGGCTGGGACAGTGGATGATGCAGGAAAGGGTATCGAAGGGATAAATAGCAAAGGACCTGCAGTGCTAGCTATTGATACGATTGAATGCTCTGGATGGGAAGAATGGCCTTTGTGGGAGCCTGAGGGGGGAGCCGAATCACCTGATAATGGAGAAGAAGAACCGTCTTATGATGGCGAAGAATCACCTGAAGATGGCGAAGAAGAACCTGTTGACATTGGCCCAAATTGA

Transcript

OS493_007381-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR019577	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR039675	Family	Cartilage intermediate layer protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_007381-T1 global RNA-seq network