Gene detail

Detailed information of OS493_006215-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_006215-T1	DYNAMIN	scaffold_13	1139827	1150358	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_006215-T1

ATGGTCATTCAACTTCGTGTTCGGATTGACTGTGAAGCCATTGCAGAACCCGGTCCGCGCGTTGAAGCTTCGGAGATGCTTGTAGAAGAAGGAGGACCCCTAGCAGTTAATCAGGGAACGGCAGTAATACCTATTGCATCAGGTAAACCACAAGCAGAGGCGACAGGAGGCCTTGGGGTAGTAGATACCAGCAATGATGGCCTTCCCAGCGCACAAAGAGTTTTAAACTTCATTGCGTTAAAGAGCTTCCGAACTGTTGATCCATCTAAACCAGAGGAGTTAAATGGCTTTCTACAGTATATGGAAAAGATACGAAAAGTGTTGATTCTGGATGTTCAGCCAGGAAGTTTAATAATAACAGTGGAATGTAGTTCTCTGGAGATACTTGAAGGATTGTGGGACGCGTACTGTGCAGGTCATCTCAATGAAATGGCACAACTATTCCTTGTCACAGACAACATTCTGAAGGAGTTTGGTCTTATTGAGGTGAAACTCACAACAACCATTTTGGAGGAGGAATATAGAGCTTGTCGAGAGTATTTCTTGCAGAGTCCAGCCAAAAACCTAGAACCCCTTGGTCAATCCGCAGAGATGGCCTTCAAAACGTATACAGAGAAAGACAGAAGTCTGTTCAAAAAATTGCAAGAGAACAGAACAGAACAAGAGGAGCTGCAACAGCGTTTGAATGCTCTTAAGGAACATGAACGACAGATGGAGGAAGAAAGTGAAACTCAAGAAAAAGCTGACATAAATATGTCAGGCGTGGTTAAAACACCCGTTGCCAAATATGGGCGGATTAGCGAGTTTGGAGTGGTGTTGGATTTCATCCAAACCATGATAAGCAACGACACTCTTCGACAGGCCTTCAACATTCCACATCTAGTCGTGGTCGGTCGACAAAACATGGCCAAGACCACGCTGATAAACCGACTGATCGGTCGATATCTTCTCCCAATGCGACGCAATGAAACGGCCAACACCCTTCAGGCACGCACCACGTATCCCATAATACTCAATCTACGTAAAGGAGAGAAGAGGACTGTGGAAGTGAAATGTGATAAAGTACCAGGAATTGGGGGAACTGTGGAAAACCCCACGGATGATGTGGTGGAGAATTTTCTCAACCAGGTTTCAGGGCATCTTCCCAAGGAAGAGGGAACTCCGATCTCAAAAACCCCTGTTAATGTTACACTGACAGGCCCCGAACTCACGAACCTCACCTTGGTCGACCTTCCCGGCGCCCATTTCGCCAACGACGACCCGCGAATGAACCACGTGACCCAAAGTTTAGTGCTAGAGTACATCGAGAAGAACACAAATAGCATTATCGTGATAGTGTCCGAGGTGGGGGACCCCACAGGTGACAGTGCAATAAACCTTGTCATGCAAAAGGCCGCTGATTTTAGGAGCCGTACCATCTGTGCACTAACCAAGCCAGACAAGCTGAGAGACTCTGATGACATGGGGAAAAGGGTGGCCATGAATGAGTCCAGCTTTACACCGGAGGATAACCGCTTTATTTTGCTTCGAGGCAAAGACGGCACAGACCCGAACGAGAAGGACTGGGACGCTGAAATGACCCGTATAAAGGAGAAGGAATGGTTCGGGCGGCACAAGCAGTACAAGGACATCCAACATGTGTGTGGTATTGATCGACTAATGGACACCATGATCTCTTTACTGGCCGAGAAAATGATCACTGAGATTCCCATTCTGGTGCGACAAATGAAACAACGAAAAACAGTGGTGGACGAAATGCTCAAAAAACTTGAGGACAGTGAAGTGCCTGAGTCGAGTGAGGGAAAGGGCGCAGTCGCTATGAAGCTGAAGAATAACCTCATCAAAGACTGTTTTCAAGGTGGACCCTTTGGCCTGCGTGATGATGATGAGATCAGAAAACAGCAAAAGAAGTTGGAGGGTGTGGCCGCCCCGCTTGGAGAAAGCAGTGAAAACAGCCAGCTGCTGCAGAAACTGCTGTACGAGGATTACACAGGATATCAACGCAATGGCAAAGCAGTCAGAGTAGTTAGAGTCCAGAGTCCAGTTGATCAATTGTTTCCATTGTCGCAGAGTCTTGTTCAGAATGTCGAGGTAACTCTACGAAAAATCGTGCAAAAATCCATCGAGCACAGCCTGTCCAAGTTCCCCAGCCTCAAACAAGCGGTTGAAGCCAAAGTGGTGAGCAAAATTTTTGACACAAAACGCGACCAGACGATCCAGTTCATCCAACAGTTTCTTGCGATGCAGAAGAAAAACATCGACGTGGTATACGCACCAGTCCCCATGCCAGGCGAGATAAGCCTCTGGAAGGCTACACTATGA

Transcript

OS493_006215-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00350	Dynamin_N	Dynamin family	Domain	Interproscan
PF01031	Dynamin_M	Dynamin central region	Family	Interproscan
PF20694	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000375	Domain	Dynamin stalk domain	Interproscan
IPR001401	Domain	Dynamin, GTPase domain	Interproscan
IPR022812	Family	Dynamin	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045063	Domain	Dynamin, N-terminal	Interproscan
IPR049341	Domain	TRADD-like N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566	DYNAMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_006215-T1 global RNA-seq network