Gene detail

Detailed information of OS493_006132-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_006132-T1	RHO FAMILY GTPASE	scaffold_13	213511	217617	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_006132-T1

ATGAGAACCGTCAAATGTGTGTTAGTGGGGGACGATAATGTCGACAAGCGCGAGTTATTCATCAAATATGTGGCCTTGTTGAATGCCGAGGCGGAAACAGCGACCGATACAGCAGAAGAAGATGCTAGCACGGCTAACCACTCACAAGCCGGCGAGTTGACTGATGTTTTTGTAAATGGAGATGTCCCTCATGATGAAATTGAGGACGGCCCTGACAGACATCCAAACTTCAGAGTCATCCACTGCAACTCCGAGAAAGGGAGTGTGTCGAGCGTAGACTCGCACCAGGACGCTATCGACCAGTGGTCAGGCGCGGTTACCGTGGGAGGCAAACAGTTTTTCTTGGACCTCTGCGATGCGCGCTGTCAGGAGGCATTTGATAACATCAGAACCGAGGTTTATTCAGACGCGGACGTTTTTCTTGTGTGCTTCTCTGTCGTTCGCTCGATCTCGTGGGAGAATGCGCTGAACAAGTGGATACCTGAAATCCAACTGCACTGCCCAGTGACTCCGTTCATATTGGTGGGCACACAGACAGAATGGCGCGAGTTATGGGACGAGAAAGACGCGTCGAAAAAACCGGTTTTTTCGGTCACTGGAACCTGTTATGCACAGCAGGTGGGCGCTGTAAAGTATTTAGAATTCGCCACTGGTGATAATGAAGTCAGAGAGATTTTTAATGCGGCTGTTTTGGTGAGCGTGATGGATCGAATGGATTTGTCGACATGTCATCCCGATTTCGAGAAAGAAGGCTTGACTTTGCTTCACCGCGCTGCTAAGCTCGATCATATTCCTTCTCTGGAAGCTCTCGTGGACTTCATTGATGTGAATGCCAGAGACAAAGAGTTGCACACTGCGTTGGACGTTGCGGTGAAAGAAAACAACTTGAACGCTATACGGTTTCTTCTCGAAAGCGGCTGCGAATTGCCGAACCCACCCGACCCTTGGAAGAAATGCTGCGAGTTCTGGGTCAGTGACGACTGGGAAGATTCGGAGCGCGTCGTGAATAGCGACCTCACCGAGTTCACCCGACAGCTGACATTTTTCTACACGACCTCATCGCCCCGCCCACTCGGAAGAATTCTTCTGATTGGTCAAAACGGAACGGACGTGGCGAAGTTTGTGAACGAGACCGTGCCGATGTTACCGATAACATCGCTGACCATTGTAAATTCAGAAGGACCGGCTCTGTTCGATTTCTCGCGCGTCCAATCCTGCTTAGAGTCTCTGACAGTAACAAATTGCGATTTTGGTTCCCCGGAGTTACCAGGAACTCTATACTCAGTAGCGAGTATCAAGAGCTTGTGTGTCGTGAAATCGGGAGTATCACGGCTGTCTGAACAGCTTGGCGAGCTTAAAAGTTTACAGCGATTGCGTTTGAGCGGCAACAAGATTCGGAAACTTCCCGATACGATTTCCAGGCTGCAGAAATTGAAGTTTGCGCATTGTGATCGGAATGCGCTTGACAATCTGCCCGATACCCTCGGTTGCTTGGGGTCGTTGGAGAGTCTGGACTTGACTCATAATAAGTTAGAGAAACTATCCGCATCGCTTGGCCTCCTGAGCAAATTGCGAAATCTTTGGTTCGCGAAAAATCGTCTGAAATTCCCGCCTGCTCACATCCTCAACAAGGGAACGGAAAGCATTTTGGAGTTTCTCAGCGATTTCTTAGACGATCCCGTCGCTAACAACCAAATCAAAATGACCGTCGTTGGAGGAAGTCAGGTGGGTAAGAGCTCCCTTGTCAAGGCCTTAAATCACAGCAAAGACTGGCGAATTAACGGCGTTGGCCCAACAACCAAAACTGAAGGCGTTGAAATCTCCTCCATGAATCTGATGCGTTCGAAATTGAAAGTGTTTGACTTGGGAGGAGACGAAGCCTTCTTCAGTTCGCATCATTTATTCCTGTCAGAGAACACTCTCTACCAGGTGGTTTTTGACATGAGTGCGTACACGATCAGCAAGTCTTCGTTGTCGATTTATCAGCTGGGCAGGGTAGAACTTTGGCTTCAAGTCATCTTCGCGAGAGCTCCGAACTCTCACGTGCTTCTCGTCGGTACTCACGCCGACGACCCGAGACTCACCGATGAGATCCGAACGCGCATTCGTGAAGACATCGAAACGCTCTTGAGCAAGTATCGTCGCGAGCATAGACGGCAGTTTGAAGGGGAAGCTGTACCTCAGTGTGGCCTTTGTGAAGGGACCCTTATCTGCGAGGGCTCCTCTACTGGCTCATTATTTTATGTCCAGGAACAAATGGTCCCTCATGTTCCTGGTCCCGTTCCAGAGCCCTGCATTCCTCACGTGGTAGGCTACTATGAAGTCAGCTGCCAGGGCCAGTTTCCCAAACATTTCCTCAGTTCGAAGAATCGGAGTCTGCAGAAGTTCAAGGTGGGCCTGGGCTCTAGCGCGTACATTCTTCTCAGCACGAAGGTCAGTTCCCGGATCCCGCAGAAGTGTTTGTACGTGCGTGACAGAATACACGAGATGTGTCACGCGGAGAATGAGTTACAGAACTGGCCGCTTCTTACTTACGACAGGCTGCGCGAGATCGCGAATGGGTGCGGGGTGAAGCAGGACTTCAAACTCAAGGCTTTAATGACATATTTTCATTCTCAAGGGGAAATTCTCTGGTATGAAGACATGCCAGACATTGGTGATGTGATCTTTATCGATCCTTCATGGCTCTCCAAACAGATATGCCTCCTTGTCGGGTCGCGTTCGGGCGCGAGTTCGGGATTGGACGGGATTTTACGGATCGACAACCTGGCCAAGACCTGGCCGGACGTCCCCGAGGGGCAGCGCTTTTCCATGCTGACTCTGTTCAGAAATCTCGGATTATGCTTCCCTCTGTCCGACACTGAAGATCTTGTACCTTTCCAGCTGCCTATTGGACGAGCGGACAAGGACACGTGGCCGACGCAACCTTCGGAAGATGAACGTCAGATCAGCTGTGAGTTTCATTTCAGTTTTCTGCCTCCGACTTTCTTTAGCGACCTTACAATCACCATCAACAGGCGAAGGCTGCCGAATAGCATCGAGGTAGAACCGACCTTCTACCGTTTCTACATGGTGTTTGCAACGACATCGATCGCTAGCATGGGCTGCCCGCTCCACTGTAAAGATATGTCAGCTCATCCCTTGGCTGATAATCTGGACGTGCACCGGGTCAGCATCGAAGGTGTCCCGTTTGAGAACAAGTTGAAAGTGATCATACGAGGTGAATCCCCTTGCTGTGTTCTTCCCGATGTGAGGGCTGCAATCAAGATGGTGGTCGACACGCGGTATCCCGGTGTACGCTACATCAGACGGATTGTGTGCCCTGTTTGTGAACTCACCGCGTTCAAGAGTCCTGCGCTGCTAAGTGACCTCGTCAAAGATGGCAACAACTGTTGTTCTTGGGGCCACGTACTAGGAACAGAGGCAGAAATCATTGCTGGCGATCTACCGGTCGTACAGGCCCCTCCTAAACTACCCACGAAAGGAGCTGTCAGGATGGGGGTGTTCTTTGGCGAGGCTGGTCAAATCCTGGACGACTGCTACTGTCCGAGGCTTCCCGTTGTCCTTCCTATCGGCTTTCAAAGCGCACCGTTCAAGAAGCGCCTTCGTGTCAACTCGCCAATCAAAGATGGCTACTCCGTGCATTTTCTGTGCGAATGTCCCGGATATTGGCATTTACCTGAAGGACCAGGCTTCCGCGTTCCAGATATCCGAGCGTTCCTGGAGGTCTTCGGGACGCGCGCGTGTAAGCTTTTGAAACTCGCTTTCATGCTGCGCGAAGATGACACGCAAGACGGGCCCAGCGAGTCACGCGTTCCTGTCAAGATCATGTTGGGCGATGCGAAATTGCGTGACGTTCTTGTCACGGACATCCAGGATTTATTGGAGCACTACTTCGTGGAATTTCCTGAACTTAAGAACAGTTACACGGGTTTCATGCAAGATGATTTAGATTTTGTGCAGAGTTACGAGGCGCTAAGCCGCAGTAAGATGTGCAAACTGCTGGAGATTTCACCTGATTGGTGGAGACTGGGTTCCCTTGTCTGCACGTACAATAGTCGGACCAATGAGCATTTCTGGCTGTGCGAGAAGCATGCGTTACTATAA

Transcript

OS493_006132-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032488	Biological Process	Cdc42 protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_006132-T1 global RNA-seq network