Gene detail

Detailed information of OS493_005649-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_005649-T1	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	scaffold_11	3694338	3703033	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_005649-T1

ATGTCGTTCACACAGATACTGCATCAAATCCTGTCAAAGTGGCCCCAAAATGAAGTAGATGATACACTATCATCCCAAAGCCATGCTCTTGGTGACTTGCAAAAGACTTCTACTATTCATTCTGGTGTCAGTGGTATTAGACACAGCAGTGCGCCGATAACTCTTTTGAATGAACTCGCAAACAAGAACAGTGGTGATAGAATGTGTGCCTCTAATACATTTCCAAGAACTACTTGTGGTAGAGTCTCTGGTTCACCAGCATCTTTCGACATGTTTGAAGGTATGCAATTAAAACATCTTGTATCCGATTCTATTTGTTCATCAGTTGGCAAAAAGTTTATACCCTTGTCAAGCAAAAATACTCATCAGACGCCCTCTGTTGCATTACCAAGCGAAGACACTCATCAGAAGTCCTCTGTTGCATTATCAAGAAGAAGCCGTGAAAAAAGAACTGAGGCCATGTCAGCGTTCACGTCTCTGTGCCCCATTACACTGAAAAGGCTGTGTACAAGACAGAGACCTCAGAGTAACAAGGAAACATCTGCAACAGAGTTGACGCTGGCATCAATGAGCAAGAGACTTATCACATTGCAGCCTGGAAGCTGTAAGAGGAGAGTTGTTAGATACAACAGAAATGATGCAGGACAGTTTGCTGATATTGGTACATGTAGCACTAAGTCATCAACAACTGCTAGCAATGATGGTATTGCTCAAACAAGTACAAACAACTGGCTGGATACTGCCAGTTGCAATAGTGAAGTTAACTGTGATTCAGGTGTTGGTATGACTGTGTCAAGTGAGGGAACCTGTGACCCGCATCATTATTTTGATCCAATCCAACCAGTTTTGAGTGATTCTACAGACCAGATGTGTTTATCAAGATCTGGAATTGAAAGCCAGCAGTCTGAAGAACACGACCGTTTAAAATCTGCAGTGGTTTCAAACTTAAATGTTACTGAGAAAGAAAGAATCACGCACAAGTGTACTGAGTATTTGGATTGTCCTCAGAGTTCAAGCGCAGAGGAAACGGGAACGTTTCTGGAGCGGGATGATTTTAGTCAGTGCTCAGTGATGGCGGAATCAAATGCAGAGCCTGAATTAATTTCAGTTGACAAGAATGACATCCATGAAAGACCACTCTCTTCGAACAAGGACTGGTATTGTACATTTGATGCATCACTTGGAAGAAAACTCTTTATTAACACCCGAACTGGACACACTTCCTTTGAAGCTCCTTGTGAATTTAATGTTAAAGATGATGACTGCTCTGGAGCGAGTGTAACTGAAGCTAGTGAGGCTAATGACTGTTCCCAGCACTTGCCACACCCTTTTGCTTCTCACTTGTCATTTTCCTGTACTCCATGGCTTCCACGAGAAGATCGAAGACACCGAGTAGCTGCCTGCCACAAGGAAATGATGTTCTATTCTCTGAAGGCCATTCAAGAAAACCAACATAATCTTATTATTTCAGGCGTGACTAAGTCTCAGTTGACTGTTCTGTACAAGGAACACCAGGAGCGACAAGAAACAGAGGAAAAGCTCTGCAAGTGGACAGATGCAGACACACTGCAAGCTTACGAACAAGAACTGTTAAACAATGGAGGTAAAACTGTGGCAGAACTGCTTGACAGTTGGCAGAATCCTGTGTTTACTGCTCCAGAAAAGGACATACTAATGGTCAACAAACCAGCCGGGGATAAGACACAGATCTCAGTGCATAACGTGGTCCACCCATACTGCTTCACAAGAGACATGCTGGCAGGCATGAGAGTACTCCGACAGCTGGATGATAAGTTCATTGTGGGAATAGTTTCACAAGAAGGAGAAGATGATGGATTGCTGGTCTTGGTGGATCAACATGCTGCTCATGAACGTGTTCGATTAGAACGTCTCCAATCAGAACTCTTTGACGATGGTGATTTGTGCCAGAAGAAAGGCAAACCTTGCTTCAAGTCTTCCCCAGTCTCTCCTCCTTTGGAGTTTCCCTTGTTTCCAGAGGAAGTGCGACTCTTAAAAACATTTCAAACTGAAATAGAGCGAATCGGAATAAGTTTTGTAATCAGAGAATCTTCATTAGTTTCTCAAGAGACAATGATCCTTGTACATGGTGTACCATCGGTATTTGTGGAGCGGGAGGTATCAGAAGTCAAGCGCGGAAGACCTTCAGTTGCTGCCAGTAATGTAAAGGCGCTGATCAGAGAGCATCTTGAACATGTTTCAACCACATGTGGAGTGTCAGCAGTTATTCCCAAGGTCATCTCCCAAGTGATCAGCTCACTAGCATGCCACGGCGCTGTGAAGTTTGGAGAGCCTCTTGGTATAAACGAGTGTCAGGAACTAATCAAGTGTCTGTCCAAGTGTCAGTTACCTTTCCAATGTGCCCATGGCAGGCCATCTGTTATTCCACTGGTTGATCTCAAGTTTTTAGGAAAGAAATGA

Transcript

OS493_005649-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08676	MutL_C	MutL C terminal dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014790	Domain	MutL, C-terminal, dimerisation	Interproscan
IPR037198	Homologous_superfamily	MutL, C-terminal domain superfamily	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR042120	Homologous_superfamily	MutL, C-terminal domain, dimerisation subdomain	Interproscan
IPR042121	Homologous_superfamily	MutL, C-terminal domain, regulatory subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_005649-T1 global RNA-seq network