Gene detail

Detailed information of OS493_004932-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004932-T1	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12	scaffold_10	1210094	1215997	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004932-T1

ATGGCCGCTGCAAGGAGTCTGATGGCTAAAACCCTGTCTGGTACAAACGCTGCGTCTCCAAAGACGCCCAGCAACGCAGTTGTGACAGAAGCAGTGCCTTTACATATCACTCCCTTGGACTCTATCGACTCGGAGCGAGATCCCGATACGCCGCACAAAGAACCCACAAGTACTTATAAAAAGAAATCAGGAAAACTTGTATCCAAACGAAAGCTTTTTCTGCAAAGTGGACAAAATCTTCACATAAATAAAGCTAAGAGACATGCTAGTCCAAAGACGCCAAATGCTGCCACTCCAGCCCCAAGGCCAGCAGATTGTTCCAGGCCTCATTTTCCGCTAACAGAACGTCAGCAGCTGCAATACCTCTTGGAAGTAACAGCTAAGGAGGCAAAAGATTCCGGGTCCGCCAGCAGCAGCAATGATGATTTACCATGCACCAACAAAGCAGCTAAGAAAGACGCAAGCAAGGACTTGAATCACTTTGAGGCTCGTATACGGAAGAGGAATGAACGGGGAGAAACTGCACTGCATGTTGCGGCCATAAGAGGCGATGTGGAGGACCTTGTTGCCTTGATAAAAGCTGGAGCTTTGGTAAACGCCAAGGATAATGCTGATTGGACACCCCTTCATGAAGCCTGTAACTATGGCAACCTCAGCATTGTCCAGGAATTAGTGTGGTCTGGTGCAGATGTCAATAGTCCAGGTTATGAAGCTATCACTCCGTTGCATGATGCTGTTATCAATGATCACGTCAAGGTTGTAAAGTTTCTGTTAGAGAACGGAGCAGATTTAAAGCTGCAAACATCTCAAAACTACAGTGCATCAGACTTAGCACGGTCTGAAGCGGTTTTAAGCCTGGTGAGTCCAGAAGAACGAACAACAAGAGACTGCCACCCTATCAACTCTCAAGAGTTCCTTGCTCATGCTCAATACAGCGACGCCAACTTCAACATACCAGGAATCAAAATCAATGGTTTAAATAGTTATTTCCTTCAAAGAAGCTCATATGGTGATAGACTTGATCAAGCAGAGGGCGGCACAAAGACCTCTCTGCCTCATGGTTTTTCATTTCAAGGTGCTCGAGATGTGGAAATGCATATAAATCCACAGGAAAATTTTGTAGTCGGAGTGTATGGATTTCCTGGAAATTCTTACCATTTTACTAATGAAGCAGATGTTAGCAAAGAAAAGGAAGCTATCAATGCAAAATTTTCATCTAAGGGAGCTGCAGAAAATAACGACAATGAAACGCATGATAATACAGCCTGGCATTTTCAGAAGTCACCGTGTTACAGTGTTGGTTCTGTAGAATTGCAACTCAATGGACATGCTGAAGTTGTAAAGAAAATAAACAGATCTGCAGCTGCTAAGGAGCTTGATCAAAATGTTATCAATGACTCTTCTTCATTGATGACTTGTCCAAACAACTTAAAGGGGCCTGTTGCTGAAGATCTTGGCGCCCAAATAAATATGATAAACATTCCTGCCAAGAAACCTGGTCTGACTGTGACATCAGAGAGCGAGGAAGACACAGTTGTACCAGAGAAATTGAATGCATGTCTTGATAAGGCAATGATTGAAATTTCTTCATACTTAAACACCAGCCAAAAGGTAAACATGGAAGTGCCGTGCATTGAAAGGGACCTGAACAAATGCAATGTAGATCTATTGAAAAATGACGCAACCCTGATTGGTAAAAGTTCATCAAGTGAATCTGTCAATGCGAACTCGCCTCAAAGACCTGAACCAATAGAGAATTCTTTAAATCTTGTCAATCACCATGATGAGCAACAGCCATCTGTTACTTGTAGCTCTACTCTACCCAATAGATTGGAGTGTAAAGAAGACGCGACCAAAGTTTTTGCTGAAGAAGTAAATACCGATACAACTAACTGCATTGAACAACAGCCACTTATGAATTTCACAAAAATCAAGCCAAGAAATGACAAGAAAAAAGACAGTGGTATGTCGGAGAGAAGTGGTAAATCTTCCAGAAGAAAACGGTCATCAACAAGATCTTCTGACATTAGCAAAAGTGAGAGCAGTCAGAGCTTGATAAAAGAAGAATGTACAAGTCACATTGCGAACAGGTCATGGAGGTCGGATCTGCCCAAATACAGGTACAGCTTGTCGGCCACACCACTTTGTGTCCCTGGCTATGAAGATTTCCTAATAAACAGCAAGAGCGGATCAAAATCTTTATCAAAATGA

Transcript

OS493_004932-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR053210	Family	Ankyrin repeat domain-containing protein 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24149	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004932-T1 global RNA-seq network