Gene detail

Detailed information of OS493_004385-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004385-T1	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	scaffold_8	5893840	5919293	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004385-T1

ATGGCTGACATTGGCGGTATGATAGCGACTACGGGCATCGAAAGCCCGAACAAACGGGCGAAAATGGATAGCGGACTAACAGCAACGAATTTCGATGAATCAAAATTCGCCAGATATTACAGAACGGACGCAGCGAGCTCTCCCACAAGCTCGCATTCCGCACCAGTTGTCAGTGATACATCAGCATATTATTCATACCCGTACACGTACACGAATTCTTTCTCTTCATACTCGTATCCTTGTGGACAGACGGACGCAACAGCTTTGTACACATATCCCGCATCTTATGGTGTCCACTACAGCCCAATGAATGGCTTCAGTACGGAATATGCGGCAGTATCAGGCTATTCATTATCTCCAAACTCCTCAGTTTCTACGTTGACATCAAACTCGAGTCTCTCCATTCCACAATCATTAACTCTAAATTCTACAGCACATCACAACACACCACCTTCGCGCGTTATCCATTGTCGAGCAGTTGCAGACGGTTGTAAAGAAACAGACTTAATAAACGTTCTTCAGCCTTTCGGGAAAATAACATATGTGACTTTATTGCCAAAAATTAGACAAGCCTTGGTGGAATTTGAAGATATTGAATCTGCCATAGCTCTAGTATCATTTTCACAGTCGAATACACTCACTGTTCTCGGTAGACAAATGTTCGTGAATTACTCAAAAAGTCAAGAAATTAAAAGGGACAAAGTTCTTAATGGCGACACTAATGGAGCCTGTTCCGAAGCTAGCAATATTCTTCTTCTTACAATAATCAATCCTTTACACCCAATTACAGTGAAAGTCCTTCATAAAATATGCAGCCCCCATGGGAAAGTTTTAAGAATTGTGATTTTTCACAAAAATGGATTACAAGCTTTGGTTGAATATCCTTTACAAACAATTTATAATCGAGCTCTTGCAACACTCAATGGACAGGACATATATGCTGGATGTTGTACACTGAAGATTGACTATTCAAAGAAAGCTAAGAAGTTAAATGTTTTTAAAAATGATGAAGAAACATGGGATTACACTGGAGCATTGAACAACAACTCAGGAATTCCAAGCAAGACAGCTCTTCTGGGTTCTGGTCTCCTGTCAGCAATTTCAGGAAATGATGCAAATGAATCGCAGCTGTCCGGTTCGCCACCTAACAACATTTCTCTAAACGGAAAAATGAGTGTGAATGGCCATGGATCACCGATTCCCATCAGTAACGAGGCCATTGCAAGAGCAGCACAATTCCCTACTGTACAAAGTATTCTAGCAAAGGTTGCTTCTCTCCATGGTAACCCACCCACAAGTCCAACATCAGGCAGCATCTCCCCTGTGGAGAATGTCGTCAAAAAGCTGGGGATTCTGGGAAGCTCGCCATACCAGTTGCCACAAAGTGGAATCTTAGGTGCTCTGCCAGGGCTGACACAGCAACAACAGCAGATAAATGGCATTTCCCATGCTCTGAATGCAGGTGGCACTGGTTGTGTGTTGATGGTTTATGGACTGAACGCAGAAAAGATGAACTGTGAGAGAATTTTCAACTTGTTTTGCCTGTATGGTAATGTTGTCAAGGTCAAGTTCCTCACAAACAAGCTTGGCGCGGCCATGGTGCAAATGTCAGACAAAATCGCTTCTGAGATGATCATCAGGAACTTGAGTGGAGCCATTCTCTTTGATTCCAAGATCAACATCATGTTTTCCAAGCACCCGTTTATAGCAGATTCATCCGTAGTCACAGCTTTACCTGATGGCTCGCCGTCATCCATGAATTTTGCTGATAACAGAAACAACCGCTTCAAGTATCTTCCAGAGGGTCAAAGTCTCAAGAACAGATATCAACCACCAACAAGAATGCTTCACTTCTTTAATGCTCCACCAAACTGCACTGTGGAAACATTGAAAGAGGTCTTCATTGCTGCCGGGTCTTTGTCTCCACTTAAAGGAACATTCTTTTCAAAAGCCAATGCCAAGTCGTCAGCAGGATTACTTGAGATGCCAGATATTCGGTCAGCTATGGAGGCTCTTACGCTCACCAACCATTTCACCATCAACCCACCAGGTGGTGGTTCCTATACCCTGAAACTGGCATTTTCCCCAAGCTCCTCAATATCTCCAACGGCTCCAACCGTTTGCGCCAGCTGTCGCCGCAGCAGCGGTGGCCGTCAGTAA

Transcript

OS493_004385-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11835	RRM_8	RRM-like domain	Domain	Interproscan
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021790	Domain	PTBP1-like, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004385-T1 global RNA-seq network