Gene detail

Detailed information of OS493_004176-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004176-T1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	scaffold_8	3091132	3107627	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004176-T1

ATGACAAAAGGCTTACCCACGGCAAATCTACTGACAAATGTTACTCAGAAGCGCCATCCAGATGTTGCTTATGCGCATAATGCAAAGAAGTATTCCCTGCAGGGTCAAACAGCAGCTCTGCAGAATACGACAGGAATGCCTGGACACAAGATTCCTACCATCGGTGTAAAATCAGAGGTGAAAGTTCCACAACCTTCAACTTCACTGTTGAGATTGAACTCTTCAATAATGACATCACAGTCTTTTGTAAATGGACAGGCGGAAATGTTGGTTAAAAACGAACAAGTTTCTGGAGAGGATTTTGTTAGTAACAAGGACACTGACACAAAGGAGGACACGGAGCATAATTGCTACATTTTGCCTTTGGAAAGTGGTTTTAGTGTCCCTCCACTGCCTAGTGACCCTCTGGATTGCCGACCCATTGGTGATCTTACAATTCCACAGGATGTTTTAACACCTCCTCCATTGGAGCCAACTTTGTGGGAAAGTTGTAGTGGCAAGAGACCTTCAACTGATAGCGCCTTCGAGTGTGCTCCTTCGCCAGCCAAAAGAAGACGTGAGTCTTCTACTGGGAGATCCAGATCCGATAGCAGTGGAGGAGGTCGTCCAAAGGGACGCAGGAACAGCTCTCAGCCATCCCCTGCGACCACACCCCTGTCGGATCCCTTTACTCCTCAACCCGAGGATCAAGAGATAGAAATTATTCAGCCACCAATAAAATCACCAACACAAGTGAGGGCTCCTTCAACAAAGCCTCCTCGACGGAGAAGTAGCACCACAGCTGGTGACAGTCCATCGGTTCCTTTACCAGCAGATCTCAGCAAACCTCCGGCGCGAGTAAAAAATAGAAGACAGAGCTCTCGTAAAAAACAGCAGGAGGAAAAGGAACGGCTGTCAAAAGGGGTGGAAGAAGTTAAGCCCCGCCCACAGAAGAATGAGAAAGGAACATTTCCTAGTTTTTCATCGTCAGATGATGAACACGAACCCACCCCTCGGTCATCAAATCTTATGACGGAGCAAGACCTTGCAGTGACACTTAACGACCTTGATCAGTTGTTTGACACTGACGAAGAAGAAGATGAGTCAGGGCAATCAAAAGCCATGAAGATTGATTTTGTGTCCCATCAGGTTCCTCCGTATGATTCCATCACAAGTATCAACACTCATCACTCATCGCTCATGAATATGGGTGTGGTGCCGCAACAGGATTTGGCACGCATGTTCCCCACACCTCCATCTCTGGAGACAGTGTCGCACTCTCCACCTTGTTCTGTTGGCAATGATTACATCAGTCCTGGAAGCGTCAAGACTGTAGTGCACAGTGCAGTGTTCTCTCCTGAGTCGCATCATTTGATGCACTTCGCAGGTGTTGATGCCGATCAAGATAAACAGCACAGTCCAATGGAACTTGGACCTGTGTTTGAGTTTCCTAAATTCCAAGAGTTTCCAGTTTCCTACACATTTGAAGCTGTAGTGGGTCTGCCAAGTTACAAAGGCCTCCCGTCTGTGATGCAGTACTCCCCCTCTTGGCAGCAGGTACCTCAGAAGACATGGAATTTATCAGTCACCAAAGTGGAAAGTGCCCCTGATGTCTTAAATTGTGACGTCGCCATCGGCACTCCCTCACCAGCAGTGGGCTACGCATACCCCCATCCTGCAAGTGTTAATAGCGACGTCAAACATTTGACGTCAGCAGCAATGTCTCCTGCCTCTCCAGCATCATCAGTGTCATCATTCTCCATGTCAACACAGTTTCCAAAGGCTTTTCATGGAAGTACCTTTGTTATGAAACCTTTGTTCCAAACACCCCTTCCAGAGGTGAATTCATTATCAAAGGTTCTGACTTTATCAGACTCATCCGCGAACTACTTTAGTGACAAATGTTATGACAGTGTAAGGCTCTGTTCGTGTTCGACACTCTCAGAGGGCATACATCCTAAAGTGTCTATCCGCAAAGGTAAAGACTATGATAGGTGTGTCTGTGGTTTTGGTGCTCTGGAAGGAATGAAATTCACTGCCGGCACAGGTCTGTTTCCTGATGACGTTTATACAGCCTTGTCTGAAAACATGAAACCACTTAGGAAGGAACGTGTTTCTCAAACTGCGCTTGATGTTAGGAAAGAGGGTTCAATGTCACTCTGTGCGAAAAGACGAGGGTCAACTGTGATTGTTCCATCACAAGTTCCATTTTGTTTGCTGGAGGAGATTGTGAGTCAATGTTCGTCACCATTTTCTTGTTCCAACTTGAAGTATCAGCTTATGTGCAAGGGCCATCATGGGATTGTGAAGCAGGTGTCTGGTGCTTGGTCTCAAAATAAAGGTGCAGAGAGTGGTATTTTACAGAGTGTTCCTCATCCTACTGCTGTCAACGCTCTCAACTTTCTTCGTCAGCTAATGCAGGATGCCCTGCAAAAATCGACAAGTAGAAAAACATGGGAGCAACCCAACGGAACAGTTGTTCAGGGACCTTTGTCTTGGAAGCAACTTCATCATCTAGCGACAAAAGGTAATGAGGAAACACCCCGAGCCCAGCCAATTCCATCAGTTACAGTAGGATATGGAGGAGATTGGATGTCTCTTTCTCCTATTGCTTTACAGTTTTGGGAGAAGCTGTTGCTTGAACCATACTCTTGTCAGCGGGATGTGGCATATATTGTTGTGGCGCCAGAGAACGATTTAGTGCTGAACAATGTGAAGTTGTTCTTTAAAGAGTTCAGTGCAGTTTATGAGACTTGTCGTCTTGGCCAACATGTCGCCATCACCAAGGTGCTTAGAGATGGTATACTGCGGATAGGACAAAAGTCACTGAAGCTTGCAAAAGAGCCTGTAGATGATTGGTTCACGCATCAAGGTTGTTCTTCTGATGGAGCAAAGCTTAAACTCTATGCCCAAGTCTTTAAACATCACTTAGGACCGTATCTCGCTTCTCTGAATCTAGACAGACACCTGTTGGATTGTGAGAAGGGAGACAAATCAGATGATAAGGGATCATCCAAGTTTGGGACGGATGGCGAAAGACCTAGTGGTAACAGTGCTGGGACTCCAAATTCAGAGCAATCTCCATCGCCATTTGGAGAAGAGGAAAGTGAGCAGAACAGTGAGGACCCACCCACTGTTGTAGTTTACATCGTGAACCCGTTCAGTAGTAACTCAAGAGAAGAAAGCTTCCCTTCCTACGTGGGGCTCTTGCGGTGCATTGCCGAGATTATACCAGATATTTCAGAAACTGGCAAAAAGAATATCGTCTTTCAGGTTGTCCCAATTCAACAGATTCTACAAGTGGACACACTGACTGGTAGTCGTGATGCAGCATTAACGTTTGTGACACAGCTCAAGTGCCTGGCCTTCTCTGTATTTTCCCGATGTCGTAAGAGCTTACCGCTGAATCTAAATGCTAAGTCCTTAACAGGATTTGGACCAGCTGCAAGGCACGAGGCTTTGCTGCGTCAGAGAGAGCTGGAAAATGCTAAAGTCTACTCAGCACCATATGTCCTCTGCCACCCAATACCTATGCCACCGGCTGATTCCGCAGACGAAACTGCAACAAGTTTGATGGCATCGATGCAGAATGCCTCTGTGTTGTACTGTGGTTACTGTCTCTCCCACGATGATAACTATCTTCTTGCAGTCTGTACAGATAGTGTAGGAGAACTCATCGAATCTTGTGTCATATCGGTCGAACCATGCCTGAGGCCTGACGGCAGGCAACGCAAGACTGCTGCTCGCACAAAGGCACTCATCAAATTATGGGAGTTTTGTCAAGGTGTCATTGCAACATCACTGATTCCTTGGAGACTGGTGATCAGTAAACTCGGGAGGATTGGGCCAGAGGAATTGAAGGACTGGAAAGAAATCTTGAGTAAGACGTCTGTGCTGTCAGGGGACCAGATGTTTAAAGACACCTGCAAAACTTGTTTCTCAATGAAACAGAAAAATCGCCCAACAATACTAGGAACAAGTCTTACGTCATTAGAACCAGAACCTTCAATCAGGCTTTACATGGCAAGAGCTTTACCAAAGGTCAGTTCCCTGTTTGAGGGAGTTAGCAATACTCGCACGTCAGTTGGTGCTGTTCCAAAACCAGATGTTTCACGAACCTACATTGCAGTGATGCCAGTAGCTTCTCTGAAATGTTCCATTGGAAAACGTTCCAATACTAAATCGCATGCCCCACCGGACACAACCACTGAAACAGTTGTAACAGACACTGATATTCTGTTGGCTGGACGGGTACATTATTTCGACTGTGCACACTGGGAAGATGCCGGGAACATTTTGGCCAGTTCTTCTCATTCTGAAACAAGCAATCCTGTTATTCTGAAGGCTGCTCTTCACATTCATAATCCAGACTTGATGGAAGGAATTCACGGTTTTGCAACTGCCTGGCATGCTCTGGCCACAAAGTCACACTGTCATGTGCTGCGATCAATACTTCAGACGTACGATGCACTCTCATGGCTGACTGTGGATCCTGTTTCCCGCGACAGACGTTCCTGTTTGCCTGTCCATTTGTATATGTTATGCCAACTTCACGACACTCTTTCTGTTCTGTTGGAAAACCAGTCTTCTTAA

Transcript

OS493_004176-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06333	Med13_C	Mediator complex subunit 13 C-terminal domain	Domain	Interproscan
PF18296	MID_MedPIWI	MID domain of medPIWI	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009401	Domain	Mediator complex subunit Med13, C-terminal	Interproscan
IPR041285	Domain	MID domain of medPIWI	Interproscan
IPR051139	Family	Mediator complex subunit 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48249	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004176-T1 global RNA-seq network