Gene detail

Detailed information of OS493_004101-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004101-T1	DYNEIN HEAVY CHAIN FAMILY PROTEIN	scaffold_8	2378060	2389676	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004101-T1

ATGTACCTTGGCGGCGCACCGGCAGGGCCTGCTGGTACAGGGAAAACAGAGACAGTCAAGGATCTGGCCAAAGCACTGGGATTACTGTGTGTTGTGACCAACTGTGGAGAAGGCATGGACTACAAGTCCATCGGCAAGATCTTCTCTGGCTTGGCACAGTGTGGAGCCTGGGGCTGTTTTGATGAGTTCAACCGTATTGATGTGTCTGTGTTGTCTGTCATCTCCACACAAATCAAAACACTGCAAAATTCGCTCAGTAACCATCTCAAGAGGCTACAGTTTGAAGGTACAGAGATAGCATTGGATGGTCGCATGGGAATCTTCATCACTATGAACCCTGGTTATGCTGGTCGTACTGAGCTTCCTGAGAGCGTCAAAGCTCTGTTCAGACCTGTAGTGTGTATTGTACCTGATCTGCAGCAGATCTGCGAGATTATGCTTTTCTCTGAAGGATTCTTACTGGCCAAGGTTCTTGCCAAGAAGATGACAGTACTGTACAAGCTTGCTTCAGGCCAGCTCTCCAAACAATCTCATTACGACTTTGGGCTTCGTGCATTGAAGGCTGTGCTAGTGATGGCAGGAGAACTAAAGAGAGGCTCTCCTGATTTGAGCGAGGATGTAGTGTTGATGCGTGCATTGCGTGACATGAACTTACCAAAGTTCGTGTTTGAAGACGTACCACTCTTCCTCGGCCTCATAGCTGACTTGTTTCCAGGCCTCGACTGTCCGAGGGTCCGCTACCCGAATTTCAATGACGCTGTAGAGGCAGTTTTACAAGACAACAAATACGTGTTACTTCCACATCAGGCTGATAAAGTTGTTCAAATGTACGAGACCATGTTGACACGTCACACAACCATGATCGTGGGTCCTACTGGAGGAGGGAAGACTGTTGTCATCAACACCTTGGCACAGGCACAGACACGTCTGAGTATACCCACCAAGCTGTATATAATGAACGCCAAGGCGTGCACAGTGGTGGAGCTGTACGGTACACTGGACCCTATCACAAGGGACTGGACAGATGGCTTGTTGTCCTGTATCTTCCGTGAGATTAACAAACCGACCGACAAGAACGAGCGCAAGTACATCGTGTTTGACAGTGATGTGGACGCTTTGTGGGTTGAAAACATGAATTCTGTCATGGACGACAACAGACTGTTGACACTGGCTAATGGCGAGAGAATTCGGCTTCAGAAACACTGTGCCCTGCTGTTTGAGGTTGCAGATCTTCGTTATGCTTCCCCGGCCACTGTGTCCCGTTGTGGTATGGTGTACGTGGATCCCAAGAACCTGGGCTACAATCCCTACTGGCAGAAGTGGTATCACGCCCGCGGCAGCGATAAGGAGAGAGAAGAGTTGAACAGGCTGTTCGAGAAATACGTGCCGCCCTGTATCGACCTCATACTGGAGGGGATGATCGAGGGAAAAATAGGAAAGAAGTTGAAGACGATTATTCCTTTGACTAATCTAAACATGGTTGTACAACTGTCCCAGATGTTGGATGCACTGCTCCCCCCTGCAGAAAACGCTCAGTTCCTTGGTACTGAAACAACAGAGGCTATATTCCTGTCATCATTGACTTGGTCGTTAGGGGGAGGCTTGCTCGAGGATGGGCGGACTGTCTTTGATGGATTCGTCAAGAGAATCGCTTCTTTGCCTCAGAATCCTGCTGCAGGAACAGCTGTTGGACCAGGTGAGATTCCCAGTGCCCAGCCAAATTTATTCGAGTATTATTTCGACTCCAAAAAGCTCCTCTGGGTCCCTTGGATCGACGTCATTCCTGAGTACCTTCACGACCCCGAGAAAAAGTACTCAGAGATTTTGGTGCCCACTGTGGACACTGTCAGGACAACATGGCTGCTGGAGTTAATGGTCAGTATTAAGAGACCTGTGGTACTCGTGGGAGAGACTGGCACCTCCAAGTCCGCTACTACGGCAAATTTTCTGAGGGGCCTGGACAAAGATTCTACGCTTCTGCTAAACATCAACTTCTCGTCCCGAACGACATCCATGGACGTACAAAGGAATCTCGAGGCCAACGTAGAGAAGAGGACAAAAGACACTTACGGTCCCCCCATGGGTAAGAGATTGCTCGTCTTCATGGATGATATGAACATGCCACAGGTCGATGAGTATGGAACACAACAGCCAATCGCCTTACTGAAAACTACTGCTGGAGAGGGAGGCATGTATGACAGAGGCAAGGAACTCAACCTGAAGAACTACAGGGATATCGGTTTTGTGGCGGCCATGGGAAAGCCTGGTGGTGGTCGTAATGAAGTGGACCCACGTTTCATCTCGCTGTTTAGCGTCTTCAACGTCACTTTCCCTACACAAGAATCGTTGACGAAAATCTACTTCTCCATTCTGAACGGCCACTTGGAGCCTTTCAAAAAGGAAGTCAAAGAGCTGACCGCCAAGATTACTTCCTCAACACTGGCCTTGTATCACAAGATCATTCAAAACCTTCCACCGACGCCTTCAAAGTTTGATAATCCCGGGCAGTTTGTCCGACTGTGGAAGAACGAGTGTCTCCGAGTGTTCTACGATCGTCTGACCAGTGCATCGGACAAGAAGCTCGTCAATGGCTACGTCACCGAGCTGGTAGAACAGAATTTCACAAGCTACGTGGACACAGTCAATCGAGAGCCGGTGCTGTTTGGAGATTATCGTAATGCCTTGACTGAAGATCCACGCTTGTATGAGGATGTGGTGGATTATGAAGCAGCCAAGGCTATTTTTGATGAGATCCTAGAGGAATACAACATGGATCACGTTGCAATGAACCTCGTTCTCTTCGATGACGCCATCGAGCATCTGACACGTGTTCACCGCGTGATCCGCATGGAGAAAGGCCACGCCCTGTTAGTGGGGTAG

Transcript

OS493_004101-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12774	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF12775	AAA_7	P-loop containing dynein motor region	Domain	Interproscan
PF12780	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF17852	Dynein_AAA_lid	Dynein heavy chain AAA lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR024317	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035699	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR041466	Domain	Dynein heavy chain, AAA 5 extension domain	Interproscan
IPR043157	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10676	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008569	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060294	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729	Cellular Component	9+2 motile cilium	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004101-T1 global RNA-seq network