Gene detail

Detailed information of OS493_003838-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_003838-T1	PROSTAGLANDIN G/H SYNTHASE	scaffold_7	6336971	6345783	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_003838-T1

ATGAATCAACTGCTTCTTGCGCTGGCCAAGCTCGTTCATACACTCCTTCAGCAGCTAATTTATTGGTGGAAGCTACCGATCGTTCTGATGATGTTTTATCAGTTTCAACAACGCGATTACTTGATGAGAAACAACTTGTTCGATAGCTACCCGTGCGATGTTACTGGACCGAAGTACGATTGTCAGGACCCAGTGATAGGTCACGTGTCTTTGGGCTGCTTCTTCAACAAGAAGTGTTCCCCGCTTTCACATTTGTACGAGAAAGACGGAATCACAACAGAAGAGTGTGTAAATCATTGTAAAGACAACAGATACTCGTATGCAGGTTTTGACCACTGTCGCAAATGTTTCTGTGGTAATCATTTCATGACATACGCATACACCAGATCGAACAGGTGTAAAACCAAGCGCAAGTCAAGGTGCAAGAAACTCAGATCTGGATGTGAAGCTTCTTCTCATATTGAGGTCTTCAGGACAATGCACTGTACTGAGAAAATGAAAACTACGCGAACCCATGATGGAACCTGCAACGACCTGGATCAACCGGCCTCGGGAAGCAGGTTTTACCGGTTTGGCCGAAACGTAAATCGCACCAAGACTTTTGAGGACAAGGACCTTTTGGAACCATGCCCGAGAGAGTTAAGTCGAAGATTGATGACAAGGGATCAATTCATTCCCGTCAAGCAACTGAACCTGTTAGCAGCAGGCTGGATCCAGTTTATCCTGCATGACTGGTTTGACCACGGACCAGTCGATACTAAACGCCGAATAAAGATCGAACTCGGCCACGATGATCCTGTTTATGATGAACATGATGGAGAAATGTCAATTCCACGAACCAAACCAGACAACTGCAAAAAAGAAAGACTCCCCGCCACCTTCCAGAATGACGTCACGCACTGGTGGGACGGGTCACAGCTGTATGGCAGTAACGAACAAACAAACGCAAAGCTGCGCAGCTTCGAAGATGGAAAAATGAAAGTTTCAGACAGAGATGGCCTGCTTCCATTGGATAAAAAAACTGGCATTGATCAAACCGGTTTCAACAACAATTGGTGGGTCGGCCTCAGCCTCGTGCACAACATATTCACCCGAGAACACAACGCCATTTGCGATATGCTCAGGACGTATTATCCTGAATGGGAAGACCAGAAATTGTACGACACAGCCAGATTAATCAACACGGCCGTGATTATGAAAATCCACACAGTGGAATGGACCACAGCCATTCTAAACAACAGTGCTTTGCGCGCCGGCGTAAACTTGAACTTTGGACTCAGTCCTGGCAAAGAGGTATATGATTGGTTGGCAGCTCATAATATCAGTATCAAAGCGAGCAGTGCAGTACTGAAGCCAATCGTGGGAACTCCAAGCGAGTTTTATGGCGTCCCCTTCTCTCTGACTGAAGAATTTGTATCAGTTTATCGCATGCACCAATTGCTGCCAGATGATCTGCATCTGCGTTCTTTCTCGACTGGTCAGCGGACAGGGAAATCATATTCACTCCCGGAGTATTCTTTTGACAAGGCCAGGAAAGTTATGACGCAAAACAGCATGGATGACATTGTGTACACATTCGGTGTGGAGAATCCTGGGGCGTTGACTCTTCATAACTACCCGAAACACCTGATGAACCTGAAGTTACCGAATCACCAACAGAAAGGAGAGACAATTGACCTTGCAACCATTGATATTTTGCGTGACCGTGAACGCGGAATCCCGCGATATAACGACTTTAGAAGGTTGACAAATCTCGCTCCCGTGGAATCGTTTGAAAAGCTCACGCCAAACAGAGCCCACTCAAATCTACTGAAAGAGCTGTACAGTGGCGATATCGAGAAATTAGACCTCATCATTGGTTGCCTGGCAGAGGAGCCTCGACCTGATGGCTATGGGTTTGGTTTCATGACGGATGATTTTACCACTGATATCTACTCACCCGAGGGACTGAAGTGGATCCAAGACACCGACATGAGCAGTGTGCTTATCCGAGCATTTCCTGAGATTCAATGGCTGAGCGGAGTTCTGGCAAATACAGAGAACGCATTTTTCCCTTGGCAAGTTTCAACCGGCGCGGCTGGATAA

Transcript

OS493_003838-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01822	WSC	WSC domain	Domain	Interproscan
PF03098	An_peroxidase	Animal haem peroxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002889	Domain	Carbohydrate-binding WSC	Interproscan
IPR010255	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR019791	Family	Haem peroxidase, animal-type	Interproscan
IPR034815	Family	Alpha-dioxygenase	Interproscan
IPR037120	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR050783	Family	Oxylipin biosynthesis and metabolism	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004601	Molecular Function	peroxidase activity	Interproscan
GO:0004666	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006979	Biological Process	response to oxidative stress	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371	Biological Process	cyclooxygenase pathway	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_003838-T1 global RNA-seq network