Gene detail

Detailed information of OS493_003621-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_003621-T1	TRANSIENT RECEPTOR POTENTIAL CHANNEL	scaffold_7	3740388	3757907	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_003621-T1

ATGGCAGAGCTGTTAGAAAACGTTGAGATGGAGGAACTGAAGGAAGAAGAAGTCGATAAAACAGTTAATACTCTACCGCCCAGTAAGAAAGCCGAAACTCTAGATCTGAGAAAGATTATAAAAGAAGGCAATATTGATGATATCACTGATAAACTGACACCGAAGGCTTTGACAAAATGTGACACAAACGCGCTACTTACAGCAATGGAGACAAATTTCAAGCTTCGCCGTTTAGCGAACAAGACGGGTCCCAGTAAAGAAGAGTTTACTAAGTTGGCTACCTCTGTGGAAGAGTTCACTTATTGTTTACTTGATCCTCTGAAATCCAACATGGAAGCACGTCATGTATTTGGGGATTCTTTAGATGACCTCATGAATGATGGTATTGACTGGGAACAAAAGAAGTTTTTTTCCCATCCGGTACTTTTTAACTTGATGAGTGACAAATGGCTAGGAACATTTGGCAGAATGAAGAGGTCGTCGTGGCTAACATGGCATCGCTGGCTGTGGATGTTGTTGAACATCTGGTGCCTGTTTGATGTGGTGATGTTTCCATTTCTCTTCGCTATATTCTATATCAAACACCGCACCAACAAGAACAAACTGAAAGAAAGAGGAATAGAGATTTCATTTTTGATAAATGCAACTTCGAAGATCGCTGACGACGCTTTTGACCTGATGAAAAGAACCATAAAGAAGTTCATCGACAATCATGGGAATGAAGAAGCCAAATATCAAATTATTATTCATGGAGAAGATTCCACTCAAAGAGATATTTGCTCTAAGAGTGTCAAAGAACTCCGAATAGGAACTGTAAAGATTCCCGCCCTTCATGAAGATCTAAAGAAAGCTGATGCAAATTTCTTTAAAAACAGTTCAGAGTCAAAGAAGGTCATATTATTCTTTACGGATCACAAGACGAACTTGAAACACGAAAAGGATCTGGTAGCGAATCAAGTGGAGGCGATGAAGGACATCAAACTAGTCCCAGTCGCGATTGGCACCCACGTCATCATCCGGGAACTGCAGAAGATCGCCAATGATGGGCATGATCATGATCATGACATCATCCACTTTGGAGAATGCGAAAAGCCAGAGACAGTTAGCAAACGAATATGGCACGAGCTGCAAGGAAAAGACATGTTTGAGAACTACCTGGAGTATTTCACGACTCCTTATTTCATCTTTTTTCGTGATACGCTGAGTTATCTCACCCTCCTTGGCCTGCACTTTGCCTTATGTCTTGCGCCGTCGAGCATTCCATTCAGCGGTTTAGAGTGGGCCATCCTTGTTTTCTTTATGGGTCGAATACTGATGGAAAGCAAACAGTTCCGGAATGTCAAAATACGGCAGGAAAAAGAGACCGTGACTAAAAAACAGAGGGGATTAGAATACAAAACATGTGGTCATGGTGACAATGAAGAAGAAGGTGAACAAAGAGAATCAAGATCAACTAAATTTGCAAAGAAGTGTGGGAAATACCTAAGTGATCGATGGAATATTTTGGACTCCATCACTCTAGTGATCTACTTGATGACGTTTCTTCTGAGAATAGTCACGTGGGTCAAGTCTGCATCAGTGACAAACAACCGAGCTCTTGTTGTAGCTGGTTATCTGTACGGCCTCAATACAATGTTTCTTACGCTCAGGGCGTTTGGTCACGTGATGGAGACAATTAAAGGCGTTGGTGCCATCCAGATAGCTTTGTTTCACATCATTGGCGATATTGCTACAATATTTTGGCAGTTTCTCGCAACCATTTTGGCTTTCTCCATTGCCATAACAAAGGTGTATATGGCAGAAAAGTCATACATTACCAAGGAAAGCTACAAAGATGATCTTGCTTGCAAAACATCTGGCATATCCTGTTGGTGGGAGATGTTCACACATCTTTGCTGGTCTTTGCTGGGTATAGCAGATTTGGACCCTCTGGATTCCGTCGACAGTCCGTCAGTGACACTGGCTCGTTTTCTGTTTGGAGCCTTTCTTATTATGGGAGTCATTCTGCTTGTCAACATGATGATAGCTCTCTTGTCTAACACATACCAACGAGTGGAGGACAACGCTTTGTTGGAATGGTCCTTCAAGAAAGCCATCACAATACAGACATACAGTACCTATCATCCAATACCAGTTCCTCTTAACCTCATCTCAAATCTTTGTGTTAGCCTCTATCGTTTATGCCCGATGAGTCCATGTACAGCTGGCTGCAAAGGACAAAAAGATAACAATCACGGCAATGATGTCAAGACCCGAGACAAATCTTTGGATTCGGTTGTTGAAAGTCTTCAGCTTAAATACTTTGCAACTTATGGATACTCCTTTCCTCTTACTGATGACAGAAAGATGGACCAAGTAATTCAAGAAACCGAAAGAAACAGGCAAATGGCCAATCAGATCGCACACAGGACATTCACAACCCATGCATTTGATGAAGGGATGCTACCTACTGGTCCAATGGCGTGGGAAAGTAAAGGCATAAGAGTAGAAGGCTGTCTTCTGGCATGCGAAGGAGGAACGTTCTGCACGACATGCAAGGGTGAATCGGAAGAATGCCATGGTGCAAGATATCTCATACCATTTTCTCCAGAATTTCCGCATTTTGAGGTTTTGATTCAAGAAACAGAGGAACAAAGGTTCCTTGGAGTGGGAGTGGTTTGGAAGAAATTTGGAAATCACGCCATGCCGGGTAGCAAAGATGGAACAGTGGGATATCTTGTCGATGAAGGCAAAATATTCGGTCCAATGGAACCTATAAACCCTGAAGACGCCATGGCTTATAGAGGAGATCTGATTGGTTGTACAGTCAAGTTTGATAAGAAAGAAGATGGCAAAGTTCCAATTGTGTTCACTTTAAACGGCAAACAGATCACTCAAGATAAGATTTTAATGGAGTATAATCCATCCGAAAAATCGCTGTACCCGTTCATAGGCATGGGACACACCGGAATAAGAGTGCTAGCTAAGATGTGTTCATCTCCGGACGATGATATTCACCCGCTGATTGAGAAAGTTAAAGCCACCGCAGATAGCATGGCAGACAAAATGGCTTTGAATTTGGACCAGGTTGACGCAGTGGTGGGGCGAATGAACGGAGAGCTCAATAATGTATGGGAAGACCTCAAAACGCTAGTTGACGACGTCCTTGAAGATTTACAACATTTCAAACAACTAATTGAACACCCTAATTATGGTGCAGAGGATATAATAGAATCAGACATAGAATGTCTACTGGCTTCCGAGGACTATGGATTGGACCTCTCTTCAGTTATGGCATTTGCTAGAACGCGTCCGTCAGTACCATACTGGGAAGAGCCCATCAGAAAGGAGGAAATACGCTATTTGTGCGAAACAGATGAATCAGGATTAGCAGACCTACAGCCGTCAGAAACTCTTCTGAAAAGAACACAAAAGAAAATGGAAGACTTGGCAAAAACAGCAGACACGGGATTCTCGTCGGTCTTTGTGAGTTTGGAAGCAGTAGAGATGGAAGCAAAGGAACGTATGCAATACCAAACTGAAAATAAAGAAAAGATCAAAAGAGAATTCAGCGGCCTTCAAGAAGCACTTAAACGTCTCCTTAAAGCTCATCGGGGACAATCGGGTCTTGAGGTCAAATACTGA

Transcript

OS493_003621-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR002153	Family	Transient receptor potential channel, canonical	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR044736	Domain	Ran-binding protein Vid30/RanBPM/SPLA, SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262	Molecular Function	calcium channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0015279	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034703	Cellular Component	cation channel complex	Interproscan
GO:0051480	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0070588	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070679	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_003621-T1 global RNA-seq network