Gene detail

Detailed information of OS493_003064-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_003064-T1	BETA-TUBULIN COFACTOR D	scaffold_6	4590541	4617595	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_003064-T1

ATGGCGGACGAACAATCCCTATCTTATAGTCTTGATCATTTTACCGAATTACAAGAAGTGACAACACTGATCGAATCTATAGGACCCATATGCCACGATGACATCTTACTAGAGGCTGCCGAGGAGCGATTTATTGTGATACTGAATAAATATCAGGAACAGCCACATTTACTGGATCCACATTTAGAAAGCCTTGTACAGAAACTACAGCATATAGTGCGTGATCCATCAAACCCTGCCAAAGTGATTCAGCAGGCCTTCAAATATCTCTATCTTATAACCAAGGTTAGGGGACCAAAATATGTGGTGCGACTGTTTGCTCATGAAGTTACCGACGTAGAACCAGTTCTTGGAATGCTGTCTCAGCAAAATCCTCAAGATCATGAGACCTGGGAGACACGTTATGTACTGCTACTCTGGCTGTCAATTGTCTGTATGGTACCCTTTGACATGGCTCGCTTTGATGGACTCAAAGAAGGACATGCTGGAGCAGTGGAAAGGCGCAAGCCAGTGGTGGAAAGGATCCTTGAAACAGCAAAGGTTTATCTGTCAGTTCCTGATAAATCACGAGATGCTGCAGCTTTAGTTATTTCAAAGTTTGTAACAAGACCAGATGTAAAGAAAGTGAAGTTGGCTGAATTCCTGGACTGGTGCTTGATACGAATGGAAAAGGCAGATGGAGAAACAATGGATGGCATGCTGTTACTTACAGGGATCTTAACAACACTGGCTTTGCTTTTCAAGCATGGGAAAAGAGAAGACTTAATACCTTATGCTCCCATAGTCTTGAAGCAAACTGGAGCTTGTCAGATATCAAATATCAACAACACGCTGCTGAGGAAGTTAAATATCAAACTTATACAGCGTCTTGGTTTGACTTTTCTGAGACCAAGGGTGGCAGCTTGGAGGTATCAACGAGGAAGTCGTTCCTTGGTATACAACTTGGCAAATCCATTCGCACAAGACCAGAATGGAGGACATCACCATACCGCAGAATTTAGCACAGACACAGAAGAAGAATACGATGTTCCCGAAGAACTAGAGGATATTATTGAGAAACTACTGACTGGCCTTAAAGACAAGGACACAGTTGTAAGGTGGTCGGCAGCTAAAGGGGTTGGACGAATAACTGGTAGACTTCCTCAAGAGCTAGCCGACCAGATTGTTGAAAACGTCCTAGAGCTATTCAGTTTCAGAGAATCAGATTGTGGTTGGCACGGAGGATGTTTAGCCCTTGCTGAGCTTGGCCGAAGAGGACTTCTGTTACCTGACCGGCTTCCTGAAGTTGTCCCTGCTGTGCTGAAAGCCTTGTCTTATGATGAGCTGAGAGGGACGTACAGTGTTGGGAGTCATGTTAGAGACGGTGCTTGCTATGTTTGCTGGTCATTTGCCAGAGCGTATGATCCAAAGGAAATCCAGCCACACGTCCAGGGAATAGCCAGTTCTCTTGTGACCGCTGCTTTATTTGATCGTGAAGTGAACTGTAGACGGGCAGCCTCTGCTGCCTTTCAGGAAAATGTGGGAAGACAAGGTACCTTTCCACATGGCATTGATATTCTTACGATGGCAGATTATTTTGCAGTTGGAAACAGAGTGAATACGTATCTGAATGTTAGTGTATCGATAGCTCAGTTTAGGGAATATACCAGAGCCTTGATTGACAACCTAGCAGATGTCAGGCTACAACACTGGGACGGAAACGTTCGTGAACTGGCATCTCAAGCATTACACAACTTGACTCCTGCAGAGCCAGAATACATGGCGAACACAGTTTTGCCTAAGATGCTTTCACAAACGAACAACATCGACCTCAACACTCGTCACGGTAACATTCTGGGATGCGCTGAAGTAACTCATGCTCTACATCTATACGCTCAACAAAGTGGAAGATCGCTTACAGATGTACTTGACAAAAACTGCTTTGAAGTTCTGAAGGACATTGTACCAAAGCTAACAACTGCAAAGCGTTTCAGAGGTCTGGAGGAGAGTTCATGCGACAGGCAGTTTGTCATCTAA

Transcript

OS493_003064-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133	Repeat	HEAT, type 2	Interproscan
IPR033162	Family	Tubulin-folding cofactor D	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12658	BETA-TUBULIN COFACTOR D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0007021	Biological Process	tubulin complex assembly	Interproscan
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333	Biological Process	adherens junction assembly	Interproscan
GO:0048487	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830	Biological Process	bicellular tight junction assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_003064-T1 global RNA-seq network