Detailed information of OS493_002970-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2924089...2929063
NR annotation: KAJ7340238.1, hypothetical protein OS493_002970 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A6HD62E3 ubiquitin-protein ligase CHIP OS=Rattus norvegicus OX=10116 GN=Stub1 PE=1 SV=1
Q9WUD1E3 ubiquitin-protein ligase CHIP OS=Mus musculus OX=10090 GN=Stub1 PE=1 SV=1
Q9UNE7E3 ubiquitin-protein ligase CHIP OS=Homo sapiens OX=9606 GN=STUB1 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564U-boxU-box domainDomainInterproscan
PF12895ANAPC3Anaphase-promoting complex, cyclosome, subunit 3RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003613DomainU-box domainInterproscan
IPR045202DomainCHIP , U-box domainInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46803E3 UBIQUITIN-PROTEIN LIGASE CHIPInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006515Biological Processprotein quality control for misfolded or incompletely synthesized proteinsInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0045862Biological Processpositive regulation of proteolysisInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071218Biological Processcellular response to misfolded proteinInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09561STUB1, CHIP; STIP1 homology and U-box containing protein 1EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_002970-T1 global co-expression network
TOP