Gene detail

Detailed information of OS493_002607-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_002607-T1	THREONINE-TRNA LIGASE	scaffold_5	5255794	5270934	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_002607-T1

ATGTCGGAAACTGGCTTAGAAGAGAAAGTGGAAAACATGAATGTGGAAGAAAAGGAGCCTAAAGCAGGAGCTAAAGGCGGGGGGAAAGCTAAAGGAGAGAAGAAAAAGAAAGAGGATCCTAGTGCATTTCCTTTGGAATTGAAGCCAGCTCCAGACTTTATAGATGAAAGAATACCACTGTTTGACAGACTGAAGGCAGAGTATGATGCTCAAATGGAAGCCAAAGAGAAAACACCAATCAAGGTGACTCTGCGAGATGGTAAAGTTGTAGATGGACTGGCCTGGAAGACCACGCCATATGAAATTGCAAGCTCAATTAGCCAAGGACTTGCTGATAACACTGTTGTTTGTAAGGTTAATGGTGAAGTATTTGACTTGGACAGAGTACTTGAAGGAGATTGCTCCCTAGAATTTCTTAAATTTGAAGATGATGATGCAAGAGCAGTATTTTGGCATTCCAGTGCACATATCATGGGTGAAGCTATGGAGAGACACTATGGAGGTCATCTGTGTTATGGGCCACCAATAGAAGAGGGATATTACTATGATATGTTCTTGGATGGAAGGCAGGTGTCATCCAATGACTATTCTTCTCTTGATACTTTGACAAAATCCATTGTGAAGGAGAAACAGCCATTTGTCAGACTTGAGATGTCAAAGGAAGACCTCTTAGAGATGTTCAAGTACAATGAATTCAAGTGCAGGATTATAAGGGAAAAAGTAAAAACGCCAACAACCACTGTGTACAGATGTGGGCCACTGATTGACTTGTGCCGAGGACCTCATGTAAGGCATACTGGAAAGATAAAGGCCATGCAAGTCACTAAGAACTCTGCTACATACTGGGAAGGGAACTGTGAAGCAGAATCTCTACAGAGACTCTATGGAATCTCATTCCCAAACGATAAACAGATGAAAGAATGGAAGAAATTCCAGGAAGAAGCAGCAAAAAGAGACCACAGAAAATTAGGCAGGGATCATGAACTGTTCTTCTTCCATGAACTGAGTCCTGGTAGCTGTTTCTTTTTACCAAAAGGAGCTCATGTCTACAACAAACTTATTGACTTCTTAAAGGAGGAGTACAAAAAGCGAGGATTCCAGGAAGTTATTTCACCAAACATTTACAGCACCAAGCTGTGGGAAACATCAGGCCACTGGCAACATTACTCAGAAAACATGTTCTCTTTTGAAGTGGAAAAGGAGCGATATGCTTTGAAGCCCATGAATTGTCCAGGACATTGTGTAATAAGATTCCAACAGGATGATGCCCACATCTTCTGTAGACCTGATCAGATTGGTGATGAAATTAAAGGCTGCCTGGATTTCCTGAGATTTGTGTACAACAAGTTTGGTTTTTCCTTCAAACTTTACCTGTCCACCAGACCTGATAAGTACATGGGTAAACGGGAGCTGTGGGACAGTGCAGAGAAGGAACTGGAAAATTCATTGAATGAATTTGGAATGGACTGGAGATTGAACCCTGGAGATGGAGCATTTTATGGACCAAAGATTGATATTCAGATCCAAGATGCTCTGCGCCGGTATCATCAGTGTGCCACCATTCAGCTTGACTTCCAACTTCCAGAACGATTCAACCTTACTTATGTCAGTGGCGAAGGTGATGACAAGAAAAGGCCGGTCATAATTCACCGCGCTATTCTGGGCTCTGTGGAGAGAATGATCGCTGTCTTGACTGAGAATTTTGGTGGGAAATGGCCGTTCTGGCTGTCACCAACTCAAGCCATTGTGATTCCAGTGTCTCCAAAATACGAAGAGTATGCTAACAAAGTGAAGCAGACCGTGTTTAGTGCAGGGTATTTGACCGATGTAGACCTTGATCACGGTACCACACTCAACAAGAAGATCAGAAATGCGCAGCTTGCTCAGTACAACTTTATATTTGTTGTTGGCGAGAAAGAAGAGAATTCCAACACGGTGAATGTTCGTACGCGGGACAACAAAGTTCAAGGAGAGAAGACCATCGATCAAGTGTTGGAAAAGTTTGCTTACCTCGCCAATGAACGAATCAAGGACAGTGAGGACGAATTTTAA

Transcript

OS493_002607-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF02824	TGS	TGS domain	Domain	Interproscan
PF03129	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF07973	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002314	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR004095	Domain	TGS	Interproscan
IPR004154	Domain	Anticodon-binding	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR012675	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR012676	Homologous_superfamily	TGS-like	Interproscan
IPR012947	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR033728	Domain	Threonine-tRNA ligase catalytic core domain	Interproscan
IPR036621	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR047246	Domain	Threonine-tRNA ligase, class IIa, anticodon-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11451	THREONINE-TRNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004829	Molecular Function	threonine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006435	Biological Process	threonyl-tRNA aminoacylation	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_002607-T1 global RNA-seq network