Gene detail

Detailed information of OS493_002560-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_002560-T1	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	scaffold_5	4410069	4438492	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_002560-T1

ATGAGTTATTTAAGTGCTCTTAACAGATCTGCATATTCATATAATCAGCAAGTATTTAAGTTTTTCAAGCAAGTATCAAGCATTGCGTGCACATTTGACACTGACTTCTGCGGTTGGTATCAGACTTCAACGGACGATTTTGATTGGACCCTGCAGTCCGGGCCGACTCCTTCAGATGACACTGGGCCACGTCATGGAGATCACACTACAGGCCGAGGGAAGTACGTGTACACTGAGGCTGATTATCCCAGAAAGAAAGACGACCGTGCTCAACTGGTGTCTCCACTATTTTCTGGTATCTTTTGTCTCTCGTTCTTTTATCACATGTCTGGACCGGCCATAGGCGAGCTTCGGTTGTTTGTTGACAACAACGTTGTCTTTGAAATAACGGGAGAGCAGGGATCTGATTGGACACAAGCACAAGTCTTGGTAAATGGATTAAACAGCAAGCTCACCTTTGAAGGCATGATAGGAGCTGGTACCCAGGGAGATCTTTCTTTGGACGACTTGTCCGTGTCTGATATGTGTAATGTCGAGGCCAAGAATGTCGCTCTTCACATGCGTGTTAACCAATCTGATCCAGCAGCACAAGCTCACGCATCGCTTGCAGTCGATGGAATCTTCAGCACTTGCACAACGTTCGATATGACAACCAATCCTTGGTTCCAAGTGGATTTGACGAAAGATTACTACATACACACAGTACACGTTTTTCTCGGGTTTGATTGTTGTCATAACGCTAACATGGACATCAAGATAGAAAGCACTAGAAATCTTCCCGAGAATCATTCGTGCATTGAGCCCAATCCTTTTCCAAGAAAATATTTCCGTGTGTTCCGCTGCAGTCCTCCAGCCACTGGTCGTTACGTAACAGTTAGCGTGACAGCAGAAGAAGATGTTGGGCTAGTGTTATGCGAAGTGGCTGTTTATGCATTTAAAGCTTTGAGCGAGTCTTTTGGAATTCTTAGAGAAGTATGGTTTAAGAAAATTAATATTCAAGATGATCCTATCCTGAAGTACCATCCAATATTTCGACAAGCCGCTGACACGCTATCCGTACTAGACGCTTTTGACATCGCTTCAGATGTTTTCAACTCCTTATGGACAGCGGTTGTCTACATTTATTCAGGTACGCCTGCAGCAAGTGGGTTTTATACATTCTACATGACATGTGAAGACGAATGTGAACTGTGGCTCAAAGAAGCAAACAAACCAACATTGAATGATGAACCTGACATGGATAATGAAGGAATACTTCTTGCAAAATTACCAAAGAGAACAGGACGCCTGAAGTGGGACGAGATAACAGCGCAAAAATCTAAGAAAGTCTACCTTAGAAGCTGCATGCTTTATCTGCTGGAGGGTTTCGCAAGAGAAGCGTATAGGCGAGGCCACTTGTCTGTGGGTTGGAGATTGTCTGATAATCCTTGGTCTTTTGAAAGGCCAATTGTTGGAAACCATACAACATGGATCCTGCCAGGAATATACAAATTGTGCTGTGTTGGTATGTGGTGTCCGAAGTGTTCTATGCAACTGAAGATTCACGTCCTTGGACAGGAATACATTATAGACAGTTCTTTGAAGATGATGTGCGAGGAAAAACAATTCAACATAAACATATCTGCAACAGTACAACCGGGACGGTATGAGACACAGGTCCATCGCTCTTTCATGAATGACTCGACTATCAGAAGAAAATACCTGGGACACATTACTGTTAACGAATGTGTTGTTGAAGAGTGTAGTTTTAATTCATTAGGACTCTGTCCTAAATGGAATACCGGTCATGGAACTGAGGGGAAGTGGAGGTTTTCCAGTCAGAATAAGCTTTCTGCCCACAATGGCTACTTTGCTTATACGGGTGGCACTCCTTATGTCGTCAATCTAGAAACACCGTGGATTTCGGCTGGCGCGTCTGTCCGCTTATGTCTGACATTCCGCTACTCGATGCGAAGTCAATCTGGTTCCAGTCTCAACGTGAGTTTGAAATCAATTCATGATGAGAGGGAAGTTCGTCTTTACAATCTGATTGGTTATCATGGAGACACATGGTTAAAGGGTCAAGTGTCTTGGACGGAAAAAGAAGACTCGAAGATTGTGTTTAAAGGCTTTACAAACAATGTTGATACATTTGCCATTGGCATCGACGATGTGAAAATTTCTACCAACAACTGTGAGATATACCCAGTGTTCTCTTCTCCAGGTCACCAATGCAGCAGTGAAGAATTTGCATGTGACAATGGAGAATGTGTTGCATCATCTTTACGGTGTGACGGAGACATGGCGTGCCTTGACAACTCAGACGAACTGAACTGCGCATGCTTGTCTAATGAGCTGAAGTGTGGCAGCGGAGGTTGTGTTCACGTGTCCAAGTTATGTGACGGTGTAAAGGACTGCCCACAGGGTTCAGACGAAACAAATTGCGAAAAGCCATGTTCTGAGTTTCAGTGTGCTGATGGGTCATGTATCCCATGGTCCTCTACCTGCCGAGTGGATGAAAACTCATGTCCAGACCACACGCACTTTCCAACAGTTTGTGGCTCAGTAAATTGTCCCTTGAACGTCCTGGACTGCAAACATGAAAGAAATAGCAAGCTACAATGCAAGTCATTTAGAGGTATTGTTAGAATCATCAATGTAAGGATGAAAATGGGAAAAGGGAAGATAGGCCTGGAAAGCAGGCAAGGTTATTGTGGCTTTGAAAATGGTTTATGTGGTTTGACTAGTGATAACATTACAGAGTTTCAGTGGAGCACTGGATCAGGAAAAACTCCATCTGAAAACAGCGGTCCTGCTTTTGATCACACCACTTACACAGAGAAAGGTAACTGTGTATCAATTGGTCTCGTGACCTCCTATCCTTAA

Transcript

OS493_002560-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000998	Domain	MAM domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR006585	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR051560	Family	MAM domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23282	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_002560-T1 global RNA-seq network