Detailed information of OS493_002416-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_002416-T1SORTING NEXIN 17 AND 27scaffold_519841781999497+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595PDZPDZ domainDomainInterproscan
PF00787PXPX domainDomainInterproscan
PF00788RARas association (RalGDS/AF-6) domainDomainInterproscan
PF21271SNX17-31_F2_FERMSortin nexin 17/31, FERM domain, F2 lobeDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000159DomainRas-associating domainInterproscan
IPR001478DomainPDZ domainInterproscan
IPR001683DomainPhox homologyInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR036871Homologous_superfamilyPX domain superfamilyInterproscan
IPR037827DomainSNX27, atypical FERM-like domainInterproscan
IPR037831FamilySNX17/27/31-likeInterproscan
IPR037833DomainSNX27, PX domainInterproscan
IPR037835DomainSNX27, RA domainInterproscan
IPR048767DomainSortin nexin 17/31, FERM domain, F2 lobeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12431SORTING NEXIN 17 AND 27Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005769Cellular Componentearly endosomeInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0032266Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:1990126Biological Processendocytic recyclingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for OS493_002416-T1 global RNA-seq network
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