Gene detail

Detailed information of OS493_001997-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_001997-T1	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	scaffold_4	3762644	3775657	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_001997-T1

ATGGCGATGTTACAACACTCCTTCTGTCTGCGAAGGTTGTGGCTTGCTTCTTCGTCGCACTTTCGGCATGGATGCCAATTGTCAAGTTATTTTTCTTGTTCTGGATATGATCAGGAATCAAAGAGTAATGCTCGCCAACAACATTGTAACCACATAGATCAATTCAGGGATAGAAATGTCATAAGCTCTGTAGATCACAGTCCATCCATTGGTCTGCAATTCAATACTCGTCAGTCCACACAAGGATTCAGGCAGGACTGTTTGTATGGTAGGTCTGGTATCTCACACAGCATACAACAAGCTGGTTTCCCTTTAATCACCATGAACAGGACATTATTTGATAAAAATGTTCTTAGCATAGAACCTTTGAAAAGGTATCCCTGCAATCATCAAAGAAGGACATTTTTTACCAGTAGTACAAGGTGCGACCCCTCTTCTAACAAATCAGCAAAGAATACAAAACTGTGGGAAGACGAAGGAAATAAATCTAAAGTAGAAGAGGCTGTTGAAGCCATAAAAGAAAAGAAAGAAAAACTGAAAGAAAAAGCATTTCAACTGGAGTGCAGTCCTGAAGAAATAGAACCAAAGGTTGCTGTTTCAACGACACCGAAGAAGACTATATGGCAAAGGGTTAAACATGAGGTTTTGCACTATGCCAATGGATTTAGACTTCTTTTTTTGGAAATAAAAATCGCTGCTCGGATGTTGTGGCAAATTATGAATGGAAGGATATTGACAAGACGTGAAAGAAGGCAGTTTCTTCGCACAGCAGCAGACATATTCCGTTTGGTTCCATTTTTGGTGTTCATACTTATTCCATTCATGGAATTCATGCTGCCTGTTGTCATTAAGCTCTTTCCAAATATGCTGCCAAGTACATTTGCGGACAAAACTAAGAAGGAAGAAGACAAAAAGAAACAGTTGAAAGTGAAAATTCAGATGGCAAAGTTTTTACAGGACACAGTAGAAGAAATGGCAGTAACAGCCAAGCAGAAGAAAACACAGGAGGTTGTTGCTGAGTTTGCAAACTTCTTTGAAAAGATCCGGAGCAGAGGACAGCAACCCAGCAATGAAGACATCCTAAGATTTTCCAAACTGTTTGAGGATCAAATCACCTTAGACAACATGAGCCGTGCTCAACTCAAAGCAATCAATAGACTACTGATGTTGCCGACCATTGGAACAAACAACTACCTGAGATTTCAGCTGCGGATGAAATTACGTCAACTTAGGGCTGATGATTTGTTAATTCAGAGGGAAGGTGTTGATAGCCTCACAGAACAAGAATTGCAGTCAGCTTGCCAGGCTCGTGGTATGAGAGCTATTGGTGTTCCTGCAGCCAGATTAAGGTCCCAACTTCGCCAGTGGCTGGAACTGCACTTGGATGAACAAATCCCAGCATCTCTGTTGCTCATGTCCAGAGCATTGTATCTTCCTGAAAATGTCAGTAAGGTTGAGCAGCTCAAGGAGACATTATCACAACTGCCAGAAACCTTGGTTGAAGAGGCTGAAATAAAAATCTGTGAAGTTTCTGGAGAGCCAGTTGATAACAAAGTTCGTTTGGGTGTTCTGAAGAAAGAGGAGCAAATGATTGCTGAGGAAAATCAAGAGCTTCTGCAAGAGGAAGTGGAAAAAAAGAAAAAGATTGAAAGCATTGCTGCTGAGATTTTAGTGGACAAAGCTCCGGAAGTGAAACCAACTGCTGATGAGGATATTTCTCAAGAGGACTGGTTATCAATTAAAGCAAGTCTTGATCAGGCTAATGAACGGGATGAACTGGAGAAAATCAAGGAAGACAGAGTGGAATATCAAGAGGAACTCCGTGAGCTGGAAACTGAAGATGAAAAACAAGTGCTTAAGGAATCGCTTGGTTCATCTCGGCTCGGTAAAAAGGTTGATGTGATGATAAATAAGATCGAGGATCGGTTGAAGCTGATAGAGACTGAAATAGAACAACCGCTTGATGCTGATGGTGATGGCAAGATCAGTTTACAGGAGATGATCTCGGGTGTACGCAGATTAAAGGACGCTCCGAGTGAAGCTAAATGCCAAAGAATAGCCGAGATGCTTGACAAGGATCATGATGGCGCTCTGGATTTAGTTGACGTGGCCACGGTTGTTGAGCTGTTGTCTATGGAAGATGTCGATCTTACTCCGGAACAAATAAAAGATATTATTGACTTACTGGAGAAAGAAAGCAAGGTGCGAAAGGCTGATGGGAGGAATCAGACAAAGTCACTGACAGAATCGACTAATATAATGAACTCATGCGCCATACCTTTGTATTCAATGATTTTTTATTATTTCATTAATTTGGTGTTAACAGCCTTAAATATATCAATCGTAAACAATCGTACATTTTCGCTTGACTACCCTGGGTGGCAGAGGCTTTTCTTACCTTTTCTTTTCTTACGGGGGCTGTAA

Transcript

OS493_001997-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07766	LETM1_RBD	LETM1-like, RBD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR033122	Domain	LETM1-like, ribosome-binding domain	Interproscan
IPR044202	Family	LETM1/MDM38-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14009	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006875	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_001997-T1 global RNA-seq network