Gene detail

Detailed information of OS493_001360-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_001360-T1	SI:DKEY-256H2.1	scaffold_3	271326	281373	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_001360-T1

ATGTGCCAGCAGATCGTGCCGAGGCTGACTGCCAAGAAACAGCAACTGGGAATCTTTTTTGTTCTCGACTATGAGTACGTAGATGACAGATGCAGCTCTGCACATCCATGCTCTGTGTCAGGCAGATCTACCCAAAACGCCAAAGCACTTGAGCTGAAGTGCAAGCTGCAACAGCTGCAGTACAACCCCACGATGTTCTGTTCAAGCACAGTAGCCGCTGTAGCCCTGCTCGCCATTATTCCGTGTTTGGTGTTCTCCGCAGAGATGCCAAATCTTCAACCCGGCGATGACGCTCCCCCGTTTGTACTTCAAGAACAACTGAGTCCCCCAAACCAAGCTCTTCTCAAGTACAATAGAACAGCCAACGATTCCAATATCCATGGGCCCATCGTGTTCCTGGCGTTCACAAATGGTTCAGGATTCTTGGAACGTCTCTTCTCCGATCTCCAAGAGCTGCTGGAGTACTCCCCTGACAATACAAACTACATATTTCTTTTTTATGGCGATTCTTCACCCACGGTCGGCACATACAGAGTTCAGCACAGTGACCTTCTTCTTAAGAAGTTCAGGGAAAACTTGGCTGCGTATTACCTTGAGAAGTCATGGAGAAAGTCAAGTCGTGCTCGCAGATTTCCAGGGGATCGAAGAATGTCATCACCTCAGGAATTCCAAAATAGCTGGAATCGACGGGTGCACTTCGCGACATTTCCCGTATCTACCCTAGGGAATTGGATCCCGCGGGTATTATCCCAGTGGTACTGTTCTGGGCATGGGTGTGGCTTTGATCAGATCGTCATTGAACATGACAATGGTTCAATTCATGTCGTGTCCAAGCGTTTAGATGCTCGCTATGATTGGCTCCCATCTCCCAACACACTCGCCAAATATGGTCATCTGTTAATGGTGTTTGTGGGTGACGCATGTGATGCCAACAAGTTTACTAATGTCGTGGATGGTAAGCTCGCCCTCGTTTCAATGGAAGGCGAGAAATGTTCATATTTCACAAAGGTCCAAAACTGTGAAAAAAATGGCGCCCTTGGTGTTGTGGTGTATCCTCCTCGGTCCCAGGGTCTTATAGACATGAACTGTAACGGCTCCGAGTGCAACACGCAGCTCAATATTCCGGCTTCCATGATTCCATACGAGGTGGGATATAGACAAAAAACCGAAACTAATCTGTACGTGCGTTATCAGACCACGCCCTCCGACACCTTTCTATTTGGAATTGATGGAGAAGGCAAGGTAGAAGAAGCCGGATGGCTTTTGTATCCTTCCATGCGATTCCTGGCATATCAGGCGCAATGGTTTAACTACAAAACGCAGCTGCTCAAGAAACTGACAACAGGGGATGCGGTGGTAATTAATGTGTTTAACCACACCACGATGCAGGGACCGAATGGAATCACTGCTACAGTGGGTCTGCCGTCCATTGATGACATCCAGCGGTATGAACACGTGGAGCTGGACTTCTCTTTGTCATGCCCAGGCTCCAGAGACATGTCATGCGCGAAGTGGGATCACGTGGTACAGTTGTACGTTTGTTGTAACGCGGCCAGCGAGCTGTGTGGCCTGGAACTAGGCAGATGGATAACAGCTTTTAGGCGAGGCATTGGACACTGGTTGACTCCGGTAAAACCGCTGATCCCGCTGCTACAAACCGCAGGCTCCAGTTCCCCCAACAGGTGTAAATTTACAATGAAAACAGTTCCTTGGGCGATGGCCTGGGTTTCATCGCTTAACATCAGACTTGTTAACAAAATACAAGTGTTACCTAATATGTTTTGCAAATACAAAACATTTCGTTCGATGGAGCAGACCATAGTTCCCTTTCAAGTGGTGCCACTCTTCAGAGGAGGAACGTTTGACAAGAACTACAACAGTAATTACACGCCTGTGGCTTTCAATCCTCCAAGAGGCACTAATAACAAAGTGAAACTTGTCGCCATAATCACAGGTCACGGCAGTGACAACAACAACTGCGCCGAGTTCTGTGTCACGTCGCATCACTTTGTTGTCAACAACAAGCAGAGTTACACCCGCGTGTTTTAA

Transcript

OS493_001360-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02225	PA	PA domain	Family	Interproscan
PF09112	N-glycanase_N	Peptide-N-glycosidase F, N terminal	Domain	Interproscan
PF09113	N-glycanase_C	Peptide-N-glycosidase F, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003137	Domain	PA domain	Interproscan
IPR008977	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR014784	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR015196	Domain	Peptide-N-glycosidase F, N-terminal	Interproscan
IPR015197	Domain	Peptide-N-glycosidase F, C-terminal	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan
IPR053251	Family	Glycoprotein-specific N-glycanase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39319	SI:DKEY-256H2.1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0016715	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_001360-T1 global RNA-seq network