Detailed information of OS493_000498-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_000498-T15'->3' EXORIBONUCLEASEscaffold_163367286455847-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03159XRN_NXRN 5'-3' exonuclease N-terminusFamilyInterproscan
PF17846XRN_MXrn1 helical domainDomainInterproscan
PF18129SH3_12Xrn1 SH3-like domainDomainInterproscan
PF18332XRN1_D1Exoribonuclease Xrn1 D1 domainDomainInterproscan
PF18334XRN1_D2_D3Exoribonuclease Xrn1 D2/D3 domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR004859DomainXrn1, N-terminalInterproscan
IPR016494Family5'-3' exoribonuclease 1Interproscan
IPR027073Family5'-3' exoribonucleaseInterproscan
IPR040992Domain5'-3' exoribonuclease 1, D1 domainInterproscan
IPR041106DomainExoribonuclease Xrn1, D2/D3 domainInterproscan
IPR041385Domain5'-3' exoribonuclease 1, SH3-like domainInterproscan
IPR041412DomainXrn1, helical domainInterproscan
IPR047007Homologous_superfamily5'-3' exoribonuclease 1, D1 domain superfamilyInterproscan
IPR047008Homologous_superfamily5'-3' exoribonuclease 1, SH3-like domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR123415'->3' EXORIBONUCLEASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004527Molecular Functionexonuclease activityInterproscan
GO:0008409Molecular Function5'-3' exonuclease activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for OS493_000498-T1 global RNA-seq network
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