Gene detail

Detailed information of OS493_000493-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_000493-T1	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	scaffold_1	6296524	6313853	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_000493-T1

ATGGCGCGACATGGCACACTCCCTGAGTTTATGCACCAAAGGCAATACGAGATCTCAGAGAAGCCTGTGTCCATTGCCTTTGACGAGCAGGGCAATACGGCAGACGTTGCCACAGAAAACGAGTTGGAGGAAGACGAAGCGGACGGATCGGACGAGTTTGACGAAAGCAGCGATGAAGAGCTTCATTGCAGTGAGCTTGATAATGACACTGGACCCAGCCTCCAGTCCATCACAGAACAATCTGCTTTGGATGATTTCTTGGCAACAGCTGAACTGGCTGGTACTGAGTTTGTAGCAGAAAAGCTGAATACAACAGTTGTGACTCCAAGTAACAATGAAGGTGTTTTGAGTAGTGCAACAGCTGCAGCAATCAAACAAGCACAGGAGGAACATCAGCAGTTCCTTGGGATTCCTCGCAGGCCAGAATGGGATGAGAACATGACAGCTGAGGAGTTAGACCAGCGAGAAAGAGATGCTTTTCTTCAATGGAGAAGACAGCTTGCACAGTTACAAGAAAAAGACCATATTATTCTAACACCATTTGAACGTAATCTTGACTTTTGGAGACAGTTGTGGAGAGTGATTGAACGCAGTGATGTGGTTGTCCAGATTGTGGATGCAAGGAACCCCCTCTTGTTTAGATGTGAAGATCTGGAAAATTATGTGACTGAAGTTGATCCAAACAAATGCAATCTTCTGCTTATAAACAAAGCTGATTTTTTATCTCCAGAGCAAAGAGATTTATGGGCAAGGTATTTCAGAAGTGTTGGATTGCCAGTGGCTTTTTGGTCTGCACAACAGGAAAATGAGAGGCTTGAAGCATTGAAAGCTATGGATGATGAAGAAAGACAGCAAGAGAAAAAGGAAGAGGAAGAGGAAACGGAAGGAGAAGAAGAAAAAGGTTTTGAGCATAAGGCTACATTACTATGGTCAAAACTTTCAGAAATGGCTGTTGAGAATGAGGAGAAAGTTGCTTTGGATTCACAAGAAACTCTTGAAGATTCCATCATTGTTGAAGCAAGCAGTTCCACAAAGTCAGACCTTAATTTAAGTAATGTTCCAGTAAAATGCTCTGAAGATAAATGTACAAGTGTTTTGTGTCCTAAAAACATCACAAAAGACATAAACAAGAGAGTCACCAATTTGTATCCAAATCATAGCGAACTATTGGCAGATACAGAAAATGAATATAATGTCCAGGCTATTGCAGAAAAAGAACTTCCTCTTCATTCAAAGACTGATATTAATTCTAGCCATGGAATCGTTAATGAACTATCATCCTCGGAGAAAAAGGTGAAGGAATTAAAAAACACTGATGACACTTTTACGTCAGATACAGAAAATATAGTAGAGGCTGTTAAACACGCAAACTCGGATGGGGAAAGTTTGGATGAGTTCTCAGCAAAACTACTGACAAGAGATGATCTATTAGCTTTATTTAAAATGCTTCACATGAAAAAAGGACAAAACACAGCGGATGATTCACAAACTGTGCTTACAACTGTTGGTCTGGTTGGGTATCCTAATGTTGGAAAGAGTTCCTCGATCAACACACTTTTGAATGACAAGAAGGTTCCTGTATCAGCAACTCCTGGACGAACTAAGCACTTTCAGACACTGTATGTAAATGAGGAGGTGTTGCTGTGTGACTGTCCAGGCCTGGTGTTCCCTTCATTTGTGTCCACAAAAGCTGACATGATCCTGAATGGAATTTTACCAATTGACCAGATGAGAGACCATGTCCCCGCTGTCTCTCTTATATCTTTCTCCACTCCTCCCAACCACCTCTGTCAGAGAATTCCTCGCGGTGTTCTTGAAGTAGTTTATGGTATTAACGTTGCCCCACCCCAGGAGGGAGAAGATCCCAATAGGGCTCCGTATGCTGATGAGCTGCTGTGTGCTTATGGCTATATCAGAGGTTTCATGACCTGCCATGGCATTCCAGATTGTTCCAGGTCTGCTCGCTACGTCCTAAAGGATTATGTCAGGGGTAAACTCCTCTACTGTATTGCACCTCCTGAATACAATGAAATAGAATTTCAACAAATCGGATACAAACTGCAAAACCTCGCAGATATTAAAAGCAAAGAACAGAAGGCCAAAGAGAGAACTCATAAACAGATGAGTGATGTGGACAAGGATTTCTTTAAACAGGAACAGGTTGGATGTTTCTCCCGAGGTTTTCACACTACAGAGTCAAGACAGTATGGAGTTGTACCTCCGCAAGAAACCGGTGCCATACCATACAAGCCTTGGAAGAAGCACCATAACAAGAATAAGAAGGAGAAACTACGCAGGCTTGTTAAGAAGTAA

Transcript

OS493_000493-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR043358	Family	Ras GTPase GNL1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45709	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_000493-T1 global RNA-seq network