Gene detail

Detailed information of OS493_000255-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_000255-T1	NUCLEOLAR COMPLEX 2 AND RAD4-RELATED	scaffold_1	2887864	2907913	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_000255-T1

ATGGCGGACGCGAAGAAGAAAAGGAGGTTATGCGACATGGATGCAGAGGAGTTCATGATGCATGGGTTTGATTCAGACGTTAGTGAGGCCGATGACGAACCCATGGACACCGAAAATGTTTCTTCAACAGAAGTGTCTCAAGAGCACAAAAAAAAATCAAAAAGTGCAGACCACAAGAACCAGCTTGCAAGATTACAAGCAAAGGATCCTGAATTCTACAAGTTCTTGAAAGAAAACGACAAAGAGCTGCTGGATTTTAATGACTCAGATACTGGCTCAGAGATGGACGATAACCAAGATGATAATGACGATGATGATCATGATGACGACAATGATGATGATGATGATGATGATGATGAAAACAAAGAAGAAGAAGGCAGCGAGGGTGATGAACCTGAGAAAAAGAATGCAGCAAAGACAAACAAATCAGATGATGAAGAAGATGATGATGAGCTGGATGATGAAGGTGTAAAACGCAAAAAGGATTCTGGTAAACCAGTGACTCTGCAGATGATTAAAGAGTGGAGAACAGGACTTGAGAAAAACTCACTTCATTCACTGAAACAAACCTTGCGAGCATTCCGGTCTGCTGTACATGGTGCTCTGGACATCGGTAGTGACGGCAAATCACAAACACGTTTGACATTCAAAGTTGAGGGAGACACAGTATTCAATGCTATCATTCAGCTTTGTTTGAAACATGTTTACTCTGTGCTGTTTCACCTTGTTGGAGGGACCCACAACAAACATGGAAAAAGAATTCTTCCTTCATCGCATGCAAAGTGGTCTCAGGTTAAAACACCAGTCAAACATTACCTCAATGATGTTCTGCAGTTGCTGCGGACTCTTGCCGAGCCTTCCATGTTGTGTGTAATTCTACGGCATGCACAGCAGTTGACTCCTTATTATGCCTGTTTCCCCAAAGTGGCTAAAGCTTTTATTAAGCGATCAGTCAGAATGTGGAGCCGTGGCGAGGAACATGTCAGGGTACTTGCTTTTCTCGGGATCAGAAATGTTGCTACCATGATGCCTTCTTCACTTCTCGAGTTTTCTGTCAAGCAACTGTACATGAATTTTGTGAAGAATTCCAAGTTCATGTCTCCAAAGACCAGGCCCATCATCACCTTCATGCAGAACTCGCTTGTGGAGGTTTTTAGTTTGGATGATCACCTCACATACCAACATGGCTTCGTTTACATCAGGCAGCTCGCAATTCACCTCAGGAATGCTATTCTGCAGAAAAAGAAGGACTCATATCAGTCAGTATATAACTGGCAGTATATTCACTGTCTTCATCTCTGGTGCCGTGTTGTAAGTGAAGTGAAGAGCAATGGGGTCCTTGATCCGCTTATTTATCCTTTGGTACAGACAGTCATCGGTGCAATCAAACTCGTCCCCGCTGCAAGATATTATCCTCTAAGATTTCATTGTATTCGTTCTTTAAACCTGCTGTCCCAGGCTACAGACACGTACATACCAGTTGCGCCATTTTTATTGGAGGTCCTAGAGTCTGTAGAATTCAACAAGAAAACTAAAATGTCCACAGCAAAGCCCACCGAGTTTTCGTGCATACTGAAAGTTTCCAAACAACAGCTAGGAACTAAACCTTATCAGGATGCTGTTGTGGATCATATCTTTGAATTGCTGCTGGAGTTCTTCTCCGTACATGCGCACTCTATAGCTTTTCCCGAAGTAGCTCTTCCTGCCGTTGTAAGGTTAAGAAAATTCATCAAGACAACAAGCGTTCCAAAATATCGGAAGCAGCTAAAACAGCTTGTTGACAAGATCGAAGAAACTTCTACTGAGGTGACAAACCGCCGCTCCAAAGTGTCTTTCAGCCCAAAGGATATCAGTGAAGTGGAAAGGTGGACGGCTCAGTACAGACAGCAACCAAACGCTATTGTAAAGTTCTACAAGACTTGGAAGGTCATGAAACCCTCCATACAACAACAGGATGAAGAGTTAGCAGAAGGTGAAAACGACGTGAATGAAGAAGATTCGGACGAGGATGAAAAAACAGAAACTTCCAAGGGGAAGAGAAAACAAAGGAGCTCCGAGAAGAAGAACGAGCAAGAGAAGAAAACGATCAAGAAACTTAAAAAGAATACAAAGAAACCCGCGGCTGAAAACATTCCACAGACGACAGTGAATCAATCTATGGATACAGCAGATAAGGAGGACATTGTGAAGGACTTTCAGTTTTCATCTGATGAGGATTAA

Transcript

OS493_000255-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03715	Noc2	Noc2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005343	Family	Nucleolar complex protein 2	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12687	NUCLEOLAR COMPLEX 2 AND RAD4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030690	Cellular Component	Noc1p-Noc2p complex	Interproscan
GO:0030691	Cellular Component	Noc2p-Noc3p complex	Interproscan
GO:0042273	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_000255-T1 global RNA-seq network