Gene detail

Detailed information of OS493_000022-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_000022-T1	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	scaffold_1	251529	266575	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_000022-T1

ATGACTGGAGGTGTTGTGGTTGTACTTGGATCCACTTGCCAAAACTTCGCTGCCGGGATGTCTGGAGGAATAGCTTTTGTGCTTGACAGGAAGAAGATCTTCTCGTCGCTGTGTAATCAGGAGATTGTGGACCTAGAGGCTGTTACTGGAGCTGATGTGGAGCTGGTCAGGGGACTGGTGCGAGACCATCAGCAGTTGACTGGGTCGTCTGTAGCCGAGCGCCTTCTGGAGGACTGGGACAGCTCTGTCAAGATGTTTGTTAAGGTGATGCCTCGTGACTACAAAAGAGCTTTGCAGCAACTGAAGGAAGAAGAAGAAGCCGAGAAACTAAAGAAAGAAAATCACCCCGCGATGAATGGCGAGAAAACTAATGGAGAAAAAACAAATGGGGAGAAGACAAACGGAGAGAAGACAAACGGAGAGAAGCCAAACGGAGAGATGACAAACGGAGAGATGACCAATGGGCTAAAACAGGAAGATTCACCCCCTCCAATCAAGAAACAAACGGATTCCAGTTTGACTGATATCGAGGAAGCCATCCCCGACACAACCAACGATCAAAAGATTATTGACAGAGTGCTGGACAAAACCAGAGGATTTGTAAAATACCCCAGAAGCAAGGTGAAGTACCGTCCACCAAAGCAACGAATGAAGGATTGGAACGAGATTTACTACAACAAAGGCAAAACAGAATTGAAAGTTCAAGCCGCAAGGTGCATGGAGTGTGGAGTGCCATTTTGTCAGTCTCATACAGGCTGTCCTCTAGGAAACATCATCCCCAGATGGAACGATTTGGTGTTTCAGGATAAATGGAAGGAGGCTCTGGACCGACTGTTACTCACTAATAACTTTCCAGAATTCACTGGACGAGTTTGCCCTGCTCCGTGTGAGGGCTCTTGTGTGTTGGGAATCAATGCTGAACCGGTGACAATCAAGAAAATCGAGTGCACCATTATTGATCATGGTTTTGAACAAGGATGGATTACACCACAGATTCCGGCTCATCGAACAGGGAAAAAGATCGCCGTTATAGGAAGTGGACCTTCTGGATTAGCAGCCGCTGCACAACTAAACAAGGCTGGTCACTGGGTTACAGTGTACGAGAGAAACGACAGGTGTGGAGGTCTGTTGATGTATGGCGTGCCAACCATGAAGCTAAGCAAGAAGATTGTTCAACGTCGCGTAGACTTGTTGGCGGCTGAAGGAATCAAGTTTGTTAATAACGCTGAGGTGGGAAAGAACATGGATGCACAACAACTCCTACAAGATAACGACGCTGTACTGTTGGCCGTGGGCTCAACATGCCCACGAAACATTCCATTACCAGGCCGTGATTTAGAGGGAATCCATTTCGCAATTCAGTTCTTGGAAACCAGCCAGAAAAGGCGTCTGGGTAATTATAACCTGCCTTCCCTTGATGCCACTGGATTGGATGTTGTCATTATCGGAGGCGGCGACACTGGAGTGGATTGTATTGGAACTTCACTCAGACAGAATGCCAAGAGCATCACTAATTTCGAAGTGCTGGGCATGCCTCCCAAGAATAGAAGCGTTACCAACCCATGGCCTCTGTGGCCACGAGTCTTCAGAGTTGAATATGGCCACGAAGAGGCCGCTGTGAAATATGGAGCCGATCCTCGTGTGTTCAGCATCATGAGTAAGGAATTCATAGGAGACGAACGAGGTCATGTTAAAGGCATAAGAACCATGCAAATCAACTGGGTCCAGGATGCCACTGGAAGGTGGACGATGGAAGAGATTCCTAACTCAGAAAAAGTGTTCAAAGCTGACTTGGTAATCATAGCAGCAGGCTTCTTAGGGCCAGAGAAAACTCTGGCTGAACAGTTTGGACTTAAGAAGGATCCCAGAAGTAATTTTGCCACTGAAAAGAACAAGTTCCTGACCAGTGTTCCTAACGTATATGCTGCAGGAGATTGTCACCGCGGTCAGTCGCTTATCGTGACAGCCATTGCTGAAGGACGACAAGCCGCTCGTCAAATCGACCTCGATCTCATGGGCGAAACCTCGCTAGCAGGTCCAGGGGGCCAACTACACAGCATTAAGCCCACCCCTACAGAGATAAAAGTGACTGCTTGA

Transcript

OS493_000022-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01493	GXGXG	GXGXG motif	Family	Interproscan
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF14691	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR006005	Family	Glutamate synthase, NADH/NADPH, small subunit 1	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR028261	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016639	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_000022-T1 global RNA-seq network