Gene detail

Detailed information of OFRAG00000017863.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000017863.1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	tig00098308	9131	25119	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000017863.1

ATGGCATTTTTACAGTGTAGGAGATTTAATTTCTTTGATAAAGAAATCATCAAGGATTCTGCAGGCAATGATTTAAATTATTTTAAGGATGTTGATATCTCGTGCAGCAGTTACAGCCAGAATTCTATGGTTGTTGGCGATACCAGAGGAATTATTCGCATACTAACTATCTCAGCATTGTCTAGACAGGTTGATAATAATGGCAGTTTGTTGTTTTCATTTAAAGCCTACAATCTTTGTGTCTCACATGTCATACAATTGAAGCACTCTTCCATCCTGATCACTATAGGGGAAGATGAATCAGGTATAAATCCTTTGATCAAAGTTTGGGACTTGGATAAGATTGATAAAGATGCTCCAATGTGTACAAGAATCAGCAAAGCTATCCCAAATAGCCCATCGCAGGTCACTTGTATCGCTGTTCATGAAAATTTGAATTATATGGCCATAGGCTTTAACAATGGTACCGTGGTGTTGTACAAGGGAGACATAACTAAAGCCAGGCACTCCAAACAAAGAATAGTCTACGAACAATCCAACTCGATCACCACTCTGTTATTCCGTTCTAAATCTCTGAAAGACGCCTCAATCACTTTATTCATCACGACTCCGGCCGTGGTTATTTCTGTGGTCATTCCTCTCCGTGGGAAGGACATCGTACTGCACAGTCTCGATCAGAAGGGATGTGAGCAGAACTGCAGTTGTGAAGTTTTGCCCGAGAACCAATTCGTTATCGCCCGAAAAGACGCGTTGTACTTTTACGAGGTGGACGAGAAAGCCCAATGCCTGGCATTCCAGGGTGAAAAGCTGACGCTGACCTACTTCTGCAACTATCTAATCATCGTCGGTCGCGAGTTGAAGTCGAGGACACGCCCAGCGATAAATTCAAATTCAGTGGAACAAGATTCTCTTGAAGTATTTACAATGACGCTGTACGACCTGAAAAATAAATTCATTGCGTTTTCCTGTCCGATGCAAAGCAATGTCTCGGCTATAGTTTGTGAATTTGGCAGCATCTTCCTGCTCTGCGGCCAGGCTAAGATATACCGTCTGAAAGAAAAAGACACGACCAGTAAACTCGAGATTCTTTACAAAAAGAATCTCTACCAAGTGGCAATCACATTGGCTCAGAATCAACATTACGACCATCAAGGCATCATGGACATTCATAGGCAGTACGCTGACCACTTGTACAGTAAAGGGGATCACTCTGGAGCAATTCGACAGTACATCAACACCATAAGTAATCTGGAACCCTCCTATGTAATATGCAAGTTTTTAGATGCTTCGCTGATTCATGACCTGGCAGCCTATTTGGAAGCTCTACATTCAGCGAAACAAGCGACTTGCGATCATACTACATTGTTGTTAAACTGCTGCGCCAAACTACAGGACATTGACCATCTCAACTCATTCATCATGAATGAAGATGATGATAAGTTATCTAATTTTGACGTAGAAACTGCATTATCTGTATGTCGCCAAGCTTGTTTCTTTGATCACGCAGTCCGTCTAGCTGAACGTCAGAACAAACACGACTGGTATCTTAAAATCCAGATCGAAGATTTAAAGGACTATACCAAGGCACTTGACTATATTGCCAATCTGCCCTTTAAAGACGCTGAGATTAGTTTGAAGCAGTATGGCAAGATTCTTTTAACAGCAGCCCCGGAGAAAACTACCAAACTATTGATGTCACTTTGTAATGATTGTAATATGATTCAAGGTAATACGGTAAATGCGGATACAGTCGTAGAACGTGCAAAGGCAGAAGAGTTTATGCATATATTTGTTGACGATTTAGGGAGGCTCAGTGAATTCCTGGAGTTTATTATAAAAGTAAGAAAGAACTGCTCTTCCATTATCTATAATACTTTATTGGATCTCTACCTTCACTCATATGGACATGAAAATGATATTTCAGAAAGAGTAATCAAAGAAAGGAAGATATTAGAATTACTACAGAATATTGAGTCTTCCTATGATACTGATCATATGATAGTACTTTGTCAAACATACAATTTTAAAGCCGGTATTTTATATTTATATGAAAAGTCTCACTCATACGAACAGATCCTCCACTACCACATGCAACACAAGTCTTCACTACACATTATAGAGACTTGCAGTTGTTTTGGTGACTCACTTCCTTCCCTCTGGACTCAAACTCTGTCGTACTTTGCGTGTTGTGATGAGACCGATACAAAATACCTCCTGCAAGTTCTACTAGAAATTGACAAACGTTGTCTTATGTCACCCCTCGCAGTGATCCAGATTCTCAGCAACAACTCTAAGACATCCCTCGGAGTGGTAAAGACCTATTTGTCAAATAAACTTAAAGAACAATCTGCGATTATTAAAAAAGATAAAGATTTAATTGAACGATACACCAAAGACACTAATAGCATGCGTGAAGAAATAAACAGCTTCAAGAAATCTGCAAAGATTTTCCAAGTTTCAAAATGTTCAGTTTGCAGTCATGCTTTGGAATTGCCATCAGTACATTTCCTTTGCGACCATTCTTACCACCAACATTGCTTCGAGAGCTATTCCAACAACTCAACTGAATGCCCGTCTTGTATACCTGAAAACAAGAGACTTCAGGACTTGATCTCTTCTCAACAGGCTACGTCTTGCGGAGGAGGACTCGATGAAGAATTCCACTCTCTCCTTGAGAAATCCAATGATCCTTTTACCGTAGTGGCAGATTATTTCTCAAGAAATATATTTAATAAAATGCCAGTCATGATGGATCCGATTGCACGACCTCGCACGAAATCTAATCCGTTCGGCGCGCAAAAAGATACTTATTGCAATGTGGCGTCAGCCTTACCACCACATCTTATTCCACGCAAGAAGAAACTCACAATATCGGCGGACGTTTCGAATTCTTTTGATTCTCAGCTTCGCCTCGAATTACCTTCGAGGCCGGCGGTTTCCATGAATCCCTTCGAATCCGATACATCGAATCATCAAGTTGATAAGAACAAGAATTCAAATCCATTTGAAACTAATTTTCAGGAAAAAAAAGTGGATGCCAAAGAAAATTTAAATCCTTTCAGTTCTCATAATTCGGAAAAAAGAGAAAATTTAAATCCTTTTGAAGATGTTTGCGATGAAGGATCTTTAAATCCTTTCGATGAAAATTATAAAGGATCTGGAAATCCATTTGACTAA

Transcript

OFRAG00000017863.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12451	VPS11_C	Vacuolar protein sorting protein 11 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000547	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016528	Family	Vacuolar protein sorting-associated protein 11	Interproscan
IPR024763	Domain	Vacuolar protein sorting protein 11, C-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006904	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032	Biological Process	endosome organization	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897	Cellular Component	HOPS complex	Interproscan
GO:0048284	Biological Process	organelle fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-