Gene detail

Detailed information of OFRAG00000017519.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000017519.1	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	tig00098026	94255	110842	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000017519.1

ATGACTAATATGTCCTATCTAATAGTTGTATTATGTTACTTGGTAATATTTACTAGCGCAATTTCTGTACAACTACCTAACATAACCGACGGCTGTATATGGTATGGGGAATGTGGAAATAAGTTAAATTGTGCGTATCGTGGACCGGCAAAGAAACTCGTAGACGAACCGGCTTTAATTATTCTAAAAGAGTTATGTCCTCACCTGTACTCGAATTCAACAGAAGGTACTCATACCTGCTGCGATTCTAGGCAACTACATACTTTCAGTTCAAGTTTATCAGTCCCTCATCAGTTATTATCAAGGTGTCCATCTTGTCTTGCAAACTTTATACAACTCTATTGTTCTCTGACGTGTGATCCTCATCAAAGTAGATATCTGGAAGAACTTACAATTACAAGCGATACAAAACCAGCCGTGAATGGTGTTAACTTTGGAATAAGTACAGAATATGCAAACGGTTTATTTGATTCCTGCAAAGACGTAATTTTTCCTAGTTCAAATGATAAAGCTATAAAATTAATGTGTGGCAATAATGACCCCTGTACGGCGGAGTCCTGGCTCTCCTATATGGGCAACACGGATAATGTCCAGGTTCCCTTCACAATTTTGTACACAATAACGGACAAAGCTGAAATTCCCTCCGTCAGTGGAAAACACATATTTCAGCCGATGAATTATACCATTGAGGACTGCCAGACTAGGTGTGCGTGTATTGATTGTCCGGCTTCATGTCCAGTGCCGCCCGCACTACCTCCTACTCCTCGAGACCTCACGAAGACTCGTGCCATCTATGCTGCAGTCTCTTTTGCTGTATTTGCGGCTGCCTTCTTCGTATTTGCCCTGTATTTTAAGAAACCCATCGATCGCCTTCTCCTCGAAAGTGATGTATCTAGATTTGAGAAGTTGCGATATTCACTGGACACTTTCTTCTGCAAGATTTTCACCAACCTCGGAGTTTACTGTTCGAAACACTATGCTCTCGTGCTCTTATTATCTGTGATATTCTGCGCGGCTTCCATTGCTGGTCTGCAGAAGTTCAAGGTCACCACAAACCCTGTTGAACTGTGGTCTTCTGAGAAGTCGCGCGCCCGACAGGAAATGATCTACTTCGACGAACACTTCACGCCATTCTATCGAATTGAACAGATTATTCTAGTCGCTAAAAATAAAGATTTCTGGATACATAATGAAGTGCAAATTGGTCCAGTTTTTAAAGCTGGCGCCATGATTGAGGGCATGAGATTGCAGAACTCCCTGGCTGCTCTTCGACATACAGACAACAACACAACTGTTTCTTTGTCCGATATATGTTTCAAACCCCTGCAACCTTCTAACAACAATTGTACTATTCAAAGTGTTTTTAACTATTACCAAAATAGTGAGGCTAGCCTGAACACCACCTACGAAGGTTTCTTCTCAACCCTGGACTACATTGACCACTTGACCGCCTGCCTCGGTAATCCGACTAGTCTTACAGATGGAACTAAACTTGAGTTGCCTTGCATGGCTGACTTCGGCGGACCAATTCTGCCAAATGTGGCACTCGGCGGATATCCAGGAAAGTCGTACTTGAATGCCACCGCCCTGGTGATCACTTTTGTCAACAACAACTTCAAGGACAAGTCCTTCACTGAACGAGCGAAACTCTGGGAACTGAAACTTGTTGAATTTCTCAACGAGTACGAAAGTGAATATTTTGATGTGCATTACACTAGTGAGCGCTCCATTGAAGATGAACTTAATCGGCAGAGTAAATCTGACATCTCAACAATTGCTCTAAGTTATGTAATCATGTTTATTTACATCACAGTGGCGCTGGGTAAATTCACTACTTGCCGCAGACTATTGATTGACTCTCAAATAACGTTGGGTTTGGCTGGAGTAACTATTGTCTTGGTGTCTGTCCTCGCCTCTCTAGGACTCTTCAGTTACTACGGACTTCCCGCCACTCTCATCATCGTCGAAGTGATTCCCTTCCTCGTCCTCGCCATCGGAGTAGATAACATCTTCATTCTGGTGCAGACTTTTCAGCGTGAGAAGTTTGACCAAGATTGTATTCATGAAAGAATTGGTCTGGTCATGGGTAAGATTGGTCCTTCTATGCTTTTGACCAGCATCAGTGAATCTACAGCTTTTTTCTTAGGAGCCTTGATTGACATGCCTGCTGTGAGGATATTTACTCTTTATGCCGGCTTGGCGGTTTTGATTGATTTCATTCTGCAAGTCACATGCTTTGTATCTCTGTTATCATTGGACGCCCGAAGGCGATTGTCTAACCGCTCCGAACCCTTCTGCTGCGTACGCCTCAACAATGTCCCCCTACCTCCTCAACACGAAGAAGCCTTTATGTATCGTTTCTTCAAAAAGATCTATGCCCCCATGTTGCTCTCGAAATACGTCCGACCAACCATTGTACTCTTATTCTCTGCCTGGATCGCAGTCTGCGTAGTTTTCGTTCCGGACTTATCGGTGGGACTCGACCAACGACTCTCTATGCCTCATGATTCATATGTGTTGAGATACTTTGAAGCTCAGATAGAATACCTATCTGTAGGACCTCCTGTTTATTTTGTGGTACGTGAAGGTCACGACTACTTGACCCCCAAGGGTCAAAATCAGATTTGCTCCAGTACCGGCTGTAACCAGGATTCTCTGCAAAACTCAATATTTACCAAGACCTTAAACCCTGATTGGTATAAAATTGCCCAACCTACTACCTCTTGGCTCGAGGACTACTTTGACTGGATTCAACCGCAGGACAGTGATTCGTGCTGTCGTGTCTATAATGACTCCGGACACTTCTGCCCTTCCACAGAAACCAACGACACGCGCTGCACGTCTTGCAATGCCGACCTGTCCGGGGGTCGACCGGTCAAGGACTCTTTCATGCGCTACCTGCCCATGTTTCTGTCTGACAATCCAGGCCTGAAGTGCAGTAAGGGTGGACACGCTGCATATGGGTCTGCCGTAGAATTGTTAAACAGAAAATTCTCCATAGGAGCGACCTACTTCATGACCTATCACACCGTTATGAAGAACTCATCTGATTTCATTTCTGCCCTAAAGTACGCTAGAGAACTCACTGATCAGGTATCCAAATCAATACAACCTGACACATCTGCTAAACCTGCTATTTTTCCTTACAGTGTATTCTATGTATTTTATGAACAATACTTGACAATATGGAAGGATACAATTACTGTATTGTTGATATCGGCAGCTTCTATCCTCCTTGTCACTACGATTCTGCTAGGATTTGATTTACATACTGCAATCATTATTGAGATATGCATTGGTATGATAGTGCTATCCATGTTTTGTATGATGTACTTCTGGTCTATTGATTTGAATGCAGTTTCTCTGGTCAACTTAGTAATTGCCATGGGAATCTCCGTTGAGTTCAGCTCTCACATCGCTCGTTCATTCGCCATCACCGTGAGTGGCGATCGAGTGGACAGGGCTAAGATTGCATTAGTCAACATGGGCAGTTCTGTTTTGAGTGGTATCACCCTCACTAAACTCGGCGGAATCGTGGTTCTCGCATTCTCCAAATCGCAGATATTTCAGGTGTTCTACTTCCGCATGTACCTCGGCATTGTGGGCTTCGGAGCCCTTCACGGACTGGTATTCCTGCCAGTTCTACTCAGCTATGTCGGTCCGCCTATAAACCGATGCCGGCAGATCAAATGCACAGATCTCAAGCGCATGAGTACGGCAGAGTTAACGGATGAAGCCTCCAACTTCAAGACGGAACCTATACACGTATTACTCTAG

Transcript

OFRAG00000017519.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460	Patched	Patched family	Family	Interproscan
PF16414	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731	Domain	Sterol-sensing domain	Interproscan
IPR003392	Family	Protein patched/dispatched	Interproscan
IPR004765	Family	NPC1-like	Interproscan
IPR032190	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015485	Molecular Function	cholesterol binding	Interproscan
GO:0015918	Biological Process	sterol transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030299	Biological Process	intestinal cholesterol absorption	Interproscan
GO:0032934	Molecular Function	sterol binding	Interproscan
GO:0042632	Biological Process	cholesterol homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-