Gene detail

Detailed information of OFRAG00000016933.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000016933.1	LON PROTEASE	tig00097835	133621	154117	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000016933.1

ATGCACACACACACACAAAATGGATTACAATCACGACTATACTGTTCTAACAAACCGACAGATAATTCAAATAATGCACCGGCTTCATCAGGTGATGGAGAAGATGATAATAATAATCCCACGGATGAGGAAGATTCCCCAATAAATGCAAGTATAGAAATGCCGAATCTTATGTCACTATCTCCGATGACTGTTCCTGAAGAATGGCCTCAGGTGCCGGTGATTGCGCTAAAACGTAATCCGGTATTTCCACGTTTCATCAAAATGATTGAAGTGACGAATCCATCTCTGATGTCGGTACTTCGGCGCAAGGTGAAACTCAATCAGCCTTATGCTGGCGTGTTTCTAAAGAGGGATGATGAAAATGAGTCGGAGGTGGTGACACATATGGATGAAATCTACGACGTAGGTACGTTCGTACAAATACACGAAATGCAGGATTTGGGAGATAAACTACGTATGATTGTCATGGGTCATCGCAGGATCAGGATCACAGATGTCCTTCCAGAGAACAGCGATTACACTCCTGTAGTTTTAGACTCTAAACCGGTCTCTAAGGTCAAGCGAAACAAAAATGGCCGACTCAGAAAATCTCGATCTTTTGAGATCCCATCGATACTCGAGGAAGATCCGATTATTAACAAAGATGACTTCAAAGCCATCCCCGACAGCATTGTGAAAATTCTGATTGCCAAGGTGGAGAATGTGAAACACCTGCCATTCAAGTCTAATGAGGAAGTCAAGGCTCTCACCGCTGAGGTAGTGAAGACAATTCGAGATATCATTTCAATGAATCCTTTGTACAGGGAAACTGTGGCCCAGATTATTCAAGGAGGTCACAGAATAATTGATAACCCTGTCTATTTAAGTGATTTGGGAGCTGCCCTCACCGGTGCAGACTCAGATGAATTACAGAAAGTCCTAGAAGAGACGAACATACCTGAGAGATTGATGTTGGCTTTATCATTATTGAAAAAGGAATTTGAACTTGGTAAACTCCAACAGAAAATCGGCAAGGAGGTGGAGAATAAGGTTAAGCAACAGCACCGTAAGTATATGTTGCACGAACAGTTGAAGATCATCAAGAAGGAGTTGGGAATGGAGAAGGATGATAAAGATGCCATTGGTGATAAATTCCGCGAAAAGCTAAAGGATTTGACAGTTCCGGAACACGTGATGACTGTAATCGACGAAGAACTCAACAAACTGGCGTTCCTCGACAACCATTCGTCGGAATTCAACGTGACGCGTAACTACTTGGATTGGTTAACACAAATGCCTTGGGGCAAGTTTTCCGATGAAAACCTGGACATGAGCCGAGCCCGCGAGGTTTTGGAAGAAGACCATTACGGCATGAAGGACGTCAAGGATCGCATTCTGGAATTCATCGCTGTCAGCCAATTGAAAGGCAGCACGCAGGGCAAGATTCTATGTTTCTACGGAGCTCCGGGTGTTGGTAAAACGTCGATTGCGAAGAGTATCGCCAGAGCCCTGAACAGGGAATACTACCGCTTCAGTGTAGGGGGCATGACTGATGTCGCAGAGATCAAGGGTCATAGACGAACATACGTTGGAGCCATGCCCGGCAAAGCCATACAATGCCTGAAGAAGACAAAGACTGAGAATCCCCTGGTGCTCATAGATGAAGTAGACAAGATGGGCAAAGGTCATCAAGGTGACCCCGCCTCAGCTCTTCTCGAGCTGCTCGACCCAGAACAGAATAACAATTTCCTCGACCACTACCTCGATGTGTCTGTGGACTTGTCAAAGGTACTGTTTATTTGCACTGCAAATGTTCTGGACACTATCCCAGACCCTCTACGCGATCGCATGGAGATGATTGACGTCAGTGGTTATGTGGCAGAAGAGAAACTGGCCATTGCAGAGCGCTACCTGGTACCCAATGCTCACAAAAACAGCGGAGTCACTACTGACCAAATTAATGTGGACAGAGCGGCCATGAATTTCCTGATTAAGTCGTATTGTCGCGAGAGTGGGGTACGCCATCTACAGAAGCAAATCGAAAAAGTATTCCGTAAAGCTGCATTGAAGATCATTGATGAAAAACAAACTTCACTAATTAACATCACTGTTGACAACTTGAATGATTATGTCGGTAAACCTATTTTTACTAGTGATAGACTTTACGACATTACACCACCTGGTGTGGTCATGGGTCTTGCCTGGACAGCTATGGGTGGGTCAACTCTTTACATTGAGACTACAGTAAGGGAGTGGTTGACAAATGAGAATGAATTAAAAAGTGACAAATCAAAACGTTCCCATGGTAATATAAAAATCACCGGTAACCTAGGCGATGTGATGAAAGAGAGTTGTAGTATTGCATACACGGTGGCACGTTCTGTGATGCATAACAAGTTCCCCGAGAATCACATGCTGCAGAATACAGAGATTCACGTGCACGTTCCAGAGGGGGCTACACCTAAGGATGGTCCTAGTGCTGGGTGCACATTGGTAAGCGCTCTGGTGTCTTTAGCTCTTGACCGACCGATTCGACAGAACGTCGCAATGACTGGAGAAATATCGCTGACCGGTAAGGTCCTTCCAGTCGGAGGCATCAAGGAGAAGTGCATTGCGGCGAAGCGTGCTGGAGTCGATTGTATACTATTACCTTTCGAGAACAAGAAAGATTACGGCGACCTCCAAGACTTTATCACCGATGGCATCGAGGTTCATTTCACAGAAACATACGATGACGTCTACAATGTTATTTTCGACCAAAAAGATAGAATCGTGAAGTAA

Transcript

OFRAG00000016933.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF05362	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR004815	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR008268	Active_site	Peptidase S16, active site	Interproscan
IPR008269	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027065	Family	Lon protease	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027503	Family	Lon protease homologue, chloroplastic/mitochondrial	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43718	LON PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-