Gene detail

Detailed information of OFRAG00000016903.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000016903.1	DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)]	tig00097827	171904	197341	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000016903.1

ATGGATGTTTCAAGAGATATTATCGATATAGAGAACCTACTAGCTCACGTACCCACTGTCCAGCATAGCGGAAGTGTGAAGCCAACTGCTGTCACTCAACAAACAAAGGGACATTGGAAAAGGAATGCTGACCGAAAATGCACGACTTGCGTTCCTCTGACCAATAATTTCGAAGATATCAAACATACGACATTGAGCGAAAGGGGAGCACTAAAGGAGGCTGGGAGGTGTTTGAAATGTGCAGATGCTCCTTGTCAAAAAGGCTGTCCAACTCAAATCGACATCAAAGCTTTCATCCAATGCATTTCTAACAAGAATTACTATGGAGCTGCAAAACATATTTTCACAGACAATCCGCTGGGTATCACTTGCGGAATGGTGTGTCCGACGAGTGATCTTTGCGTAGGCGGCTGTAACCTCGAGGCTACAGAAGAAGGAGCCATCAATATCGGAGGACTGCAACAGTTTGCCACTGAGACGTTCATGCAAATGGGTATTGCGGCGTGCGTTGCCCCAGCAACCGTAATGGCCACCATCGGTGACGTCACTTATGACACGCCGATAGCGATTATCGGATGCGGTCCATCCGGTATCAGTTGCTCCACCTATCTAGGTCGTTACGGCTACCGTAACATTACCATTTACGAACGGCAGAGTAACCCGGATGAGATTGGAGGTTTAAGTCGTAGTGAGATACCCCAATATCGCCTTCCATATGGCGTCATACGCTTCGAGTATGAACAGATGAAACAACTCGGAGTCAAGGTGGAGCATGGTAAACAATTGTCGACCTCAGCTGGATTTACAGTTGACTCGCTGATCTCTCAAGGACACACCGCCATCTACATTGCCATTGGATTACCAGCCCCTAAGATTATTCCATTGTTCTCCGAACTCACTGAAGAGATGGGATTTTATACTTCAAAAACTTTTCTGCCAAAAGTTACTGCTGCCAGCAAAAAAGGATCGTGCTTATGCTCCGCCCAGTTGCCCAGTATCCACGGTACCGTTGTGGTGCTCGGTGCCGGGGACACCGCCTTCGATTGCGCAACTTCCGCTCTACGCTGCGGCGCTCGTAAAGTGTTCGTGGTATTCCGTAAAGGGTTCAATAATATCCGCGCCGTGCCTGAAGAGGTGGAATTGGCGATGAAGGAACACTGCGAATTTATGCCATTTTTGGAGATTCAAAAAGTGAAGACCACAAAAAGTAGAATTATCAGCATTGTCTGTGCACGGACCTTTCAGGAAGAAGACGGAAAGTGGACCACCGATACGGAACAGTTGGTGACACTGAAAACCAGTTTCATCATTTCCGCTTTCGGATCATCCCTCCATGACACTGATGTGAGCTCCGCAATGTGTTGCGCTACTGATCGCTGGAACCAACCAATCGTTGATCCCGTAACTCTGATGACTTCTGCGCCGGGCGTTTTCGCCGGCGGCGATGTTGGGGGCGTGGCCAGCACGAGCGTCGAAGCCACCAACGACGGTAAACACGCCGGACAACAGATTCACAAGTACATCCAGAATACCATAGGCAGTCCGATGACCTCTGACCCCAGCATTCCTCTGTTCAGCACCGCAATCGATGAAGTTGATATCTCTGTTGAAGTTTGCGGTATCAAGTTTCAGAATCCTTTTGGACTTGCCAGCGCTCCTCCAGCCACAAGTGCCTCCATGATAAGAAGAGCCTTTGAACAAGGCTGGGGTTTCACTATCACTAAGACCTTCACTCTCGATAAGGACATTGTCACTAATGTATCGCCGCGTATAGTGAGAGGCACAACTTCCGGTCACCTGTTCGGTCCCGGTCAAGGCTCCTTCCTCAACATCGAACTAATCAGCGAGAAAACAACGGCTTACTGGTGTCAGAGCATAAGCGAACTGAAAAGGGATCACCCAGATAAGATAGTGATTGCGAGTATTATGTGTGCCTATGTGAAGGAGGATTGGGTTCAACTGACCAAACAAGCTGTGGCGAGTGGAGCCGACGCACTCGAGTTAAACCTATCGTGCCCTCACGGAATGGGAGAACGCGGCATGGGGCTAGCCTGCGGACAGAAGCCGGAGTTAGTGCGTGACATATGTTCTTGGGTTCGGGAGGCGTGTCCTATTCCGTTTTTCGCGAAACTCACGCCAAACGTTACTGACATCGTACAAATCGCAAGGGCCGCAAAAGAAGGTAAAGCTGATGGTGTCACCGCTACTAACACCGTCAGTGGACTGATGAAGTTAAATTCAGACGGAACGGCTTGGCCACGAGTAGGAAAGGAACAAAGGACCACATATGGTGGAGTATCAGGTAACGCAATACGTCCAATAGCTCTACGCGCAGTATCTGCGATAGCTAGAGCCCTACCAGGGTTCCCTATCCTCGCAACTGGGGGCATTGATAGCGCAGACAGTGGCATGGAGTTCTTACAAGCGGGGGCTTCCGTTCTACAGGTTGGCAGCGCCGTACAGAACCAAGACCTTAGCGTGATCTCCGACTACGTGACAGGACTGCAAACTTTGCTGTACCTCGGTTCAAGGTCGGATGCCGACTTCTGGCAAGGTCAATCCCCGATGACTCCGCGACACCAAGCCGGGAAATTGGTCCCGCAGGCGGTTATCGGCAAGCATCTCCCAAATTTTGGAGATTACGCAATACAGAGAAAAAAATTAATCTCGGAGCACATGAAGGACATCACGCACACGAATGATGCCGAGAAGAACGTCCCTGCTCCGATACATAACCGCGAGATACCCTCGATCAAAGAAGTCATTGGACAGGCATTGCCTCGTATAGGAGCCTATTCACAACTAGACAACTCCCAGGCATCGCAAGTAGTTGCGCTTATAGACGAGGACATGTGCATAAACTGCGGTAAATGCTACATGACATGCGCCGACTCCGGATATCAAGCCATCGACTTCAACTCGGACACGCACTTGCCCAATGTCACCGACGATTGCACCGGATGCAATCTATGTTTGAGTGTCTGCCCCATCATGGACTGCATCACCATGGTACCAAAGACAGTGGATCACGTTCCTAAACGTGGCATTCCTATTGGTCAGCTGCCGAAATTTGTACACTAA

Transcript

OFRAG00000016903.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01180	DHO_dh	Dihydroorotate dehydrogenase	Domain	Interproscan
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF14691	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan
PF14697	Fer4_21	4Fe-4S dicluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005720	Domain	Dihydroorotate dehydrogenase, catalytic	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR028261	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43073	DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)]	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002058	Molecular Function	uracil binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006210	Biological Process	thymine catabolic process	Interproscan
GO:0006212	Biological Process	uracil catabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0017113	Molecular Function	dihydropyrimidine dehydrogenase (NADP+) activity	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-