Gene detail

Detailed information of OFRAG00000016495.2 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000016495.2	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	tig00097738	446507	469242	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000016495.2

ATGAATAATCTCACAGAAGGGGCAAAGGATAACGGAAATGATGCCGTCGAGGACTTGCGCGAAGCTACCGGGAGAGACGATGGCCTTGCTCAGGTATTCGTGGAGTACTTCAAAAGGGCGGGCATCCTGATTGGAGTATGGGGATGGGGTTATATGAGGATGAGTTCCGCTTGGCTGCTCATGGGATTATTTTTCTACTGCGGCAACGAGAAGTACAAGATGCTCAAGGAAAAGAAGCGTAATTTTTTGAAAACCGCTGCCAAAGAAGATGAGAAAAAGGCGATACTGTCATCTGTAGACGAACTTCCTTCTTGGGTTTATTTTCCTGACGTTGAAAGATGTGAATGGCTAAATAAGATTATAAAGCAGATGTGGCCTTTTATTGGAGAGTATTTCAGGAATCTTCTAGAAACAACGGTGTTGGCTAGTGTACAGTCCAGCCTTCCCAGTGCCTTGAAACCATTTAAGTTTGGCAATATTCAACTTGGAGATATTCCTCCTCGTATCGGCGGAGTGAAAGTTTACATTGAAAATGTAAAGAGGAATGAAATTTACATGGATGTTGAAATAAACTATGCTAGTGATTGCAATGTGAAAATGAATGTAAAAGGAATGAATCTTGGTATCAAAGATCTCATGTTACATGGTACTCTGAGAGTGATAATGAAACCATTAGTAAATCAGATTCCAATTATCGGAGGGTATACTTTTTTCTTTCTAAATCAACCTACTTTGGACTTTGATTTGACCGGAGTGTCCAATATTCTCGATCTTCCTGTGATAAGCAACACTCTGCGATCTTTGATCCTTGAACAAATCTCCAATTACATGGTACCACCTAACAAACTCGCCTTTCCAATGGTCGTCGGTGTTACGGCTGACCAACTGAGACACCCCCTTCCCGATGGTGTGATGAGATTAAATGTAATTGCTGGCAAGAATCTTAAATCCGCCGATGTACAATTTCTGGGTAAAGGAAAGTCAGATCCATATTGCAAAATTCTAGTTGGAGCTGATAAGTACAAGACCAAAGTGATCCAGAATACCTGCAATCCACACTGGGATGATACTTTTGATATGATTATAGATCAGAAACTTGGCCAATATGCAGAAATTATGGTGTTTGATGAAGACCCAGGAGAAGATGATGAATTAGGCAGCTTTAGTTTGGATATTCAAGATGTGGAATCTAATGGATTTATAGACTCATGGTTTCCATTGGAAAATGTTAAAACTGGAGTTATTCATTTGAAAGCAAATTTCCTATATCTAAGCAAAGAACATCAAGATATTGATAAGGTATCTAGAATGTCATCTCAAATTGACGATCTAGCTTCAGTTCTAGTTATGGTGACAATAGATTCAGCGTCATCGCTTAAGAGAATTAAAAAAATGTTGGAACCAACGCCTTACGTGAAATTGGGGATTGGACAAAAAGAATTTGAAACCAAAACTGTTTTACCAACTACTAATCCACGATTTGAGGAGACTTTCCAATTTCTCATTCATAATATCAATAGCCATGACTTGGATATTGAGGTAATGGATAAAAATAAGGGGAAAAGTCTTGGCTCTGCAACTATAAGTTTGCAAGAAGCTCTGACGTCACATGACATGACATTAAACCGTCCTTTCCCACTGCATGGTGGTGAAAGCAATTCTCAAATCACTGTTCAAATTGTCATTCGTATATTATCTGAAGAAAAACCAAAAGGATGGGCAAAAGAAAATTTATTTAAAGCAAAAACTAAATTGTCTCAAATCAAAACTGAAGTGGACAACCATCCAGAGATTACAATAAGTTCTCCTGTTTCTAATAATGCTGACTCTACCAATATTAATGATAAGATTGAATCTGATATTTCCATGAATATGAGTTCTGTGCCAACAAGTCCTGTGTCTAATGCGTCTTCCTATATCAATGAAACCAACGAAGTCAGGAAACGCATAAATACTATGGAGACTGACAGCAGAAGTGAATCAATGCAATCTACAATGTCCAGTGAATATCTGGGAAAGGTTCAGTTAACTATTCGTTATAGCCAACAAAGATCTAGACTTATCGTCGCAGTCCATAAATGCATAGATTTGCTAGCTTGCGACAGTGACGGAGTATCGGATCCTTACGTCAGACTCTATCTTCTTCCCGATAGAAGTAACCATTCAAAACGTAAAACACAAACCATTAAAGATAATCTAGCTCCCATTTTCGATGAAAAAGTTGAATGGACTATAACTCACGAAGAAGCAATAAAAAGAACATTAGAGATTGGAGTCAAAAATGCAGTGTCCATGTTTTCTAAGAATAGAACTCACATAGGAAAAGTATATATTGATTTACAATCTCTCGACCTAAACCAAGCATCAACGAATTGGTATGATTTACAAGATGGTGAATTAATGAAACACGAATAA

Transcript

OFRAG00000016495.2

TACAGTGTGGTGTTATGCTCTTATATTCGAAGTTCGATGAATAATCTCACAGAAGGGGCAAAGGATAACGGAAATGATGCCGTCGAGGACTTGCGCGAAGCTACCGGGAGAGACGATGGCCTTGCTCAGGTATTCGTGGAGTACTTCAAAAGGGCGGGCATCCTGATTGGAGTATGGGGATGGGGTTATATGAGGATGAGTTCCGCTTGGCTGCTCATGGGATTATTTTTCTACTGCGGCAACGAGAAGTACAAGATGCTCAAGGAAAAGAAGCGTAATTTTTTGAAAACCGCTGCCAAAGAAGATGAGAAAAAGGCGATACTGTCATCTGTAGACGAACTTCCTTCTTGGGTTTATTTTCCTGACGTTGAAAGATGTGAATGGCTAAATAAGATTATAAAGCAGATGTGGCCTTTTATTGGAGAGTATTTCAGGAATCTTCTAGAAACAACGGTGTTGGCTAGTGTACAGTCCAGCCTTCCCAGTGCCTTGAAACCATTTAAGTTTGGCAATATTCAACTTGGAGATATTCCTCCTCGTATCGGCGGAGTGAAAGTTTACATTGAAAATGTAAAGAGGAATGAAATTTACATGGATGTTGAAATAAACTATGCTAGTGATTGCAATGTGAAAATGAATGTAAAAGGAATGAATCTTGGTATCAAAGATCTCATGTTACATGGTACTCTGAGAGTGATAATGAAACCATTAGTAAATCAGATTCCAATTATCGGAGGGTATACTTTTTTCTTTCTAAATCAACCTACTTTGGACTTTGATTTGACCGGAGTGTCCAATATTCTCGATCTTCCTGTGATAAGCAACACTCTGCGATCTTTGATCCTTGAACAAATCTCCAATTACATGGTACCACCTAACAAACTCGCCTTTCCAATGGTCGTCGGTGTTACGGCTGACCAACTGAGACACCCCCTTCCCGATGGTGTGATGAGATTAAATGTAATTGCTGGCAAGAATCTTAAATCCGCCGATGTACAATTTCTGGGTAAAGGAAAGTCAGATCCATATTGCAAAATTCTAGTTGGAGCTGATAAGTACAAGACCAAAGTGATCCAGAATACCTGCAATCCACACTGGGATGATACTTTTGATATGATTATAGATCAGAAACTTGGCCAATATGCAGAAATTATGGTGTTTGATGAAGACCCAGGAGAAGATGATGAATTAGGCAGCTTTAGTTTGGATATTCAAGATGTGGAATCTAATGGATTTATAGACTCATGGTTTCCATTGGAAAATGTTAAAACTGGAGTTATTCATTTGAAAGCAAATTTCCTATATCTAAGCAAAGAACATCAAGATATTGATAAGGTATCTAGAATGTCATCTCAAATTGACGATCTAGCTTCAGTTCTAGTTATGGTGACAATAGATTCAGCGTCATCGCTTAAGAGAATTAAAAAAATGTTGGAACCAACGCCTTACGTGAAATTGGGGATTGGACAAAAAGAATTTGAAACCAAAACTGTTTTACCAACTACTAATCCACGATTTGAGGAGACTTTCCAATTTCTCATTCATAATATCAATAGCCATGACTTGGATATTGAGGTAATGGATAAAAATAAGGGGAAAAGTCTTGGCTCTGCAACTATAAGTTTGCAAGAAGCTCTGACGTCACATGACATGACATTAAACCGTCCTTTCCCACTGCATGGTGGTGAAAGCAATTCTCAAATCACTGTTCAAATTGTCATTCGTATATTATCTGAAGAAAAACCAAAAGGATGGGCAAAAGAAAATTTATTTAAAGCAAAAACTAAATTGTCTCAAATCAAAACTGAAGTGGACAACCATCCAGAGATTACAATAAGTTCTCCTGTTTCTAATAATGCTGACTCTACCAATATTAATGATAAGATTGAATCTGATATTTCCATGAATATGAGTTCTGTGCCAACAAGTCCTGTGTCTAATGCGTCTTCCTATATCAATGAAACCAACGAAGTCAGGAAACGCATAAATACTATGGAGACTGACAGCAGAAGTGAATCAATGCAATCTACAATGTCCAGTGAATATCTGGGAAAGGTTCAGTTAACTATTCGTTATAGCCAACAAAGATCTAGACTTATCGTCGCAGTCCATAAATGCATAGATTTGCTAGCTTGCGACAGTGACGGAGTATCGGATCCTTACGTCAGACTCTATCTTCTTCCCGATAGAAGTAACCATTCAAAACGTAAAACACAAACCATTAAAGATAATCTAGCTCCCATTTTCGATGAAAAAGTTGAATGGACTATAACTCACGAAGAAGCAATAAAAAGAACATTAGAGATTGGAGTCAAAAATGCAGTGTCCATGTTTTCTAAGAATAGAACTCACATAGGAAAAGTATATATTGATTTACAATCTCTCGACCTAAACCAAGCATCAACGAATTGGTATGATTTACAAGATGGTGAATTAATGAAACACGAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF17047	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR031468	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR037733	Domain	Extended synaptotagmin, C2A domain	Interproscan
IPR037752	Domain	Extended synaptotagmin, C-terminal C2 domain	Interproscan
IPR039010	Domain	Synaptotagmin, SMP domain	Interproscan
IPR051634	Family	Extended Synaptotagmin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0008429	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0061817	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-